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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    875401 8ufc:V (3.09) BS02 CA ? N/A P98155 38176410
    875402 8ufc:W (3.09) BS01 CA ? N/A P98155 38176410
    875403 8ufc:W (3.09) BS02 CA ? N/A P98155 38176410
    875404 8ufc:X (3.09) BS01 CA ? N/A P98155 38176410
    875405 8ufc:X (3.09) BS02 CA ? N/A P98155 38176410
    875406 8ufc:Y (3.09) BS01 CA ? N/A P98155 38176410
    875407 8ufc:Y (3.09) BS02 CA ? N/A P98155 38176410
    875408 8ufd:A (3.26) BS01 WJI N/A N/A A0A045GQW7 39231991
    875409 8ufd:B (3.26) BS01 WJI N/A N/A A0A045GQW7 39231991
    875410 8ufg:F (3.1) BS01 WJR ? GO:0005886 ... Q6FFD7 38172635
    875411 8ufg:G (3.1) BS01 WJR ? GO:0005886 ... Q6FFD6 38172635
    875412 8ufh:F (3.2) BS01 WJW ? GO:0005886 ... Q6FFD7 38172635
    875413 8ufh:F (3.2) BS02 Y75 ? GO:0005886 ... Q6FFD7 38172635
    875414 8ufh:G (3.2) BS01 WJW ? GO:0005886 ... Q6FFD6 38172635
    875415 8ufh:G (3.2) BS02 Y75 ? GO:0005886 ... Q6FFD6 38172635
    875416 8ufi:A (3.1) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    875417 8ufi:A (3.1) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    875418 8ufi:B (3.1) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    875419 8ufi:B (3.1) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    875420 8ufj:A (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    875421 8ufj:A (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    875422 8ufj:B (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    875423 8ufj:B (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    875424 8ufj:C (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    875425 8ufj:C (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    875426 8ufp:A (1.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    875427 8ufp:A (1.9) BS02 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    875428 8ufp:A (1.9) BS03 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    875429 8ufp:A (1.9) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    875430 8ufp:A (1.9) BS05 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    875431 8ufp:B (1.9) BS01 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    875432 8ufp:B (1.9) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    875433 8ufp:B (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    875434 8ufp:B (1.9) BS04 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    875435 8ufp:B (1.9) BS05 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    875436 8ufq:A (1.98) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    875437 8ufq:A (1.98) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    875438 8ufq:A (1.98) BS03 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    875439 8ufq:A (1.98) BS04 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    875440 8ufq:B (1.98) BS01 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    875441 8ufq:B (1.98) BS02 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    875442 8ufq:B (1.98) BS03 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    875443 8ufq:B (1.98) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    875444 8ufq:C (1.98) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    875445 8ufq:C (1.98) BS02 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    875446 8ufq:C (1.98) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    875447 8ufq:C (1.98) BS04 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    875448 8ufq:D (1.98) BS01 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    875449 8ufq:D (1.98) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    875450 8ufq:D (1.98) BS03 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    875451 8ufq:D (1.98) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    875452 8ufr:A (1.871) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875453 8ufr:A (1.871) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875454 8ufr:A (1.871) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    875455 8ufr:A (1.871) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875456 8ufr:A (1.871) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875457 8ufr:B (1.871) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875458 8ufr:B (1.871) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875459 8ufr:B (1.871) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875460 8ufr:B (1.871) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875461 8ufr:B (1.871) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    875462 8ufr:C (1.871) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875463 8ufr:C (1.871) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875464 8ufr:C (1.871) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    875465 8ufr:C (1.871) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875466 8ufr:C (1.871) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875467 8ufr:D (1.871) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875468 8ufr:D (1.871) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875469 8ufr:D (1.871) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875470 8ufr:D (1.871) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875471 8ufr:D (1.871) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    875472 8ufs:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875473 8ufs:A (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875474 8ufs:A (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875475 8ufs:A (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875476 8ufs:B (2.05) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875477 8ufs:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875478 8ufs:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875479 8ufs:B (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875480 8ufs:C (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875481 8ufs:C (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875482 8ufs:C (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875483 8ufs:C (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875484 8ufs:D (2.05) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875485 8ufs:D (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875486 8ufs:D (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875487 8ufs:D (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875488 8uft:A (1.78) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875489 8uft:A (1.78) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875490 8uft:A (1.78) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    875491 8uft:A (1.78) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875492 8uft:A (1.78) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875493 8uft:B (1.78) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875494 8uft:B (1.78) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875495 8uft:B (1.78) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875496 8uft:B (1.78) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875497 8uft:B (1.78) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    875498 8uft:C (1.78) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875499 8uft:C (1.78) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875500 8uft:C (1.78) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    875501 8uft:C (1.78) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875502 8uft:C (1.78) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875503 8uft:D (1.78) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875504 8uft:D (1.78) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875505 8uft:D (1.78) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875506 8uft:D (1.78) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    875507 8uft:D (1.78) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    875508 8ufu:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875509 8ufu:A (2.05) BS02 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875510 8ufu:A (2.05) BS03 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875511 8ufu:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875512 8ufu:A (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875513 8ufu:B (2.05) BS01 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875514 8ufu:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875515 8ufu:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875516 8ufu:B (2.05) BS04 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875517 8ufu:B (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875518 8ufu:C (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875519 8ufu:C (2.05) BS02 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875520 8ufu:C (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875521 8ufu:C (2.05) BS04 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875522 8ufu:D (2.05) BS01 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875523 8ufu:D (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    875524 8ufu:D (2.05) BS03 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875525 8ufu:D (2.05) BS04 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    875526 8ufu:D (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    875527 8ufy:A (1.2) BS01 FMN N/A N/A Q44467 39149041
    875528 8ufy:A (1.2) BS02 LAC N/A N/A Q44467 39149041
    875529 8ufy:A (1.2) BS03 PYR N/A N/A Q44467 39149041
    875530 8ufy:B (1.2) BS01 FMN N/A N/A Q44467 39149041
    875531 8ufy:B (1.2) BS02 PYR N/A N/A Q44467 39149041
    875532 8ufy:B (1.2) BS03 LAC N/A N/A Q44467 39149041
    875533 8ug1:A (1.99) BS01 WNH 2.7.1.3 GO:0004454 ... P50053 37992274
    875534 8ug1:B (1.99) BS01 WNH 2.7.1.3 GO:0004454 ... P50053 37992274
    875535 8ug3:A (2.02) BS01 WRE 2.7.1.3 GO:0004454 ... P50053 37992274
    875536 8ug3:B (2.02) BS01 WRE 2.7.1.3 GO:0004454 ... P50053 37992274
    875537 8ugb:A (3.0) BS01 peptide 3.1.4.35 GO:0001750 ... P11541 38159849
    875538 8ugb:A (3.0) BS02 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    875539 8ugb:A (3.0) BS03 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    875540 8ugb:A (3.0) BS04 ZUD 3.1.4.35 GO:0001750 ... P11541 38159849
    875541 8ugb:B (3.0) BS01 peptide 3.1.4.35 GO:0001750 ... P23439 38159849
    875542 8ugb:B (3.0) BS02 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    875543 8ugb:B (3.0) BS03 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    875544 8ugb:B (3.0) BS04 ZUD 3.1.4.35 GO:0001750 ... P23439 38159849
    875545 8ugd:3C (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875546 8ugd:3C (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875547 8ugd:3C (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875548 8ugd:3C (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875549 8ugd:3D (3.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875550 8ugd:3E (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875551 8ugd:3P (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875552 8ugd:3P (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875553 8ugd:3P (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875554 8ugd:3P (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875555 8ugd:3Q (3.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875556 8ugd:3R (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875557 8uge:3C (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875558 8uge:3C (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875559 8uge:3C (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875560 8uge:3C (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875561 8uge:3D (3.5) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    875562 8uge:3E (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875563 8uge:3P (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875564 8uge:3P (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875565 8uge:3P (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875566 8uge:3P (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875567 8uge:3Q (3.5) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    875568 8uge:3R (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875569 8ugf:3C (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875570 8ugf:3C (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875571 8ugf:3C (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875572 8ugf:3C (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875573 8ugf:3D (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    875574 8ugf:3E (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875575 8ugf:3P (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875576 8ugf:3P (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875577 8ugf:3P (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875578 8ugf:3P (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875579 8ugf:3Q (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    875580 8ugf:3R (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875581 8ugg:3C (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875582 8ugg:3C (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875583 8ugg:3C (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875584 8ugg:3C (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875585 8ugg:3D (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    875586 8ugg:3E (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875587 8ugg:3P (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875588 8ugg:3P (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875589 8ugg:3P (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875590 8ugg:3P (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    875591 8ugg:3Q (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    875592 8ugg:3R (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875593 8ugh:1B (2.1) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875594 8ugh:1D (2.1) BS01 SF4 N/A N/A A0A8D1TTB3 38811722
    875595 8ugh:1E (2.1) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875596 8ugh:1F (2.1) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875597 8ugh:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875598 8ugh:1G (2.1) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875599 8ugh:1G (2.1) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875600 8ugh:1G (2.1) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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