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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8001 1dm8:B (2.25) BS05 TZC 1.14.13.39 GO:0004517 ... P29473 N/A
    8002 1dma:A (2.5) BS01 NCA 2.4.2.36 GO:0047286 ... P11439 7568123
    8003 1dma:B (2.5) BS01 NCA 2.4.2.36 GO:0047286 ... P11439 7568123
    8004 1dma:B (2.5) BS02 AMP 2.4.2.36 GO:0047286 ... P11439 7568123
    8005 1dmb:A (1.8) BS01 GLC ? GO:0005515 ... P0AEX9 8399200
    8006 1dmb:A (1.8) BS02 GLC ? GO:0005515 ... P0AEX9 8399200
    8007 1dmc:A (-1.00) BS01 CD ? GO:0046872 ... P55949 7819257
    8008 1dmc:A (-1.00) BS02 CD ? GO:0046872 ... P55949 7819257
    8009 1dmc:A (-1.00) BS03 CD ? GO:0046872 ... P55949 7819257
    8010 1dmd:A (-1.00) BS01 CD ? GO:0046872 ... P55949 7819257
    8011 1dmd:A (-1.00) BS02 CD ? GO:0046872 ... P55949 7819257
    8012 1dmd:A (-1.00) BS03 CD ? GO:0046872 ... P55949 7819257
    8013 1dmh:A (1.7) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    8014 1dmh:A (1.7) BS02 MCT 1.13.11.1 GO:0003824 ... P07773 10801478
    8015 1dmh:B (1.7) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    8016 1dmh:B (1.7) BS02 MCT 1.13.11.1 GO:0003824 ... P07773 10801478
    8017 1dmi:A (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    8018 1dmi:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    8019 1dmi:A (2.0) BS03 BHS 1.14.13.39 GO:0004517 ... P29473 N/A
    8020 1dmi:A (2.0) BS04 BHS 1.14.13.39 GO:0004517 ... P29473 N/A
    8021 1dmi:B (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    8022 1dmi:B (2.0) BS02 BHS 1.14.13.39 GO:0004517 ... P29473 N/A
    8023 1dmi:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    8024 1dmi:B (2.0) BS04 BHS 1.14.13.39 GO:0004517 ... P29473 N/A
    8025 1dmi:B (2.0) BS05 ITU 1.14.13.39 GO:0004517 ... P29473 N/A
    8026 1dmj:A (2.35) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11590164
    8027 1dmj:A (2.35) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11590164
    8028 1dmj:A (2.35) BS03 AP4 1.14.13.39 GO:0004517 ... P29473 11590164
    8029 1dmj:A (2.35) BS04 ITU 1.14.13.39 GO:0004517 ... P29473 11590164
    8030 1dmj:A (2.35) BS05 AP4 1.14.13.39 GO:0004517 ... P29473 11590164
    8031 1dmj:B (2.35) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11590164
    8032 1dmj:B (2.35) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11590164
    8033 1dmj:B (2.35) BS03 AP4 1.14.13.39 GO:0004517 ... P29473 11590164
    8034 1dmj:B (2.35) BS04 ITU 1.14.13.39 GO:0004517 ... P29473 11590164
    8035 1dmk:A (1.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11590164
    8036 1dmk:A (1.9) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11590164
    8037 1dmk:A (1.9) BS03 AP6 1.14.13.39 GO:0004517 ... P29473 11590164
    8038 1dmk:A (1.9) BS04 ITU 1.14.13.39 GO:0004517 ... P29473 11590164
    8039 1dmk:A (1.9) BS05 AP6 1.14.13.39 GO:0004517 ... P29473 11590164
    8040 1dmk:B (1.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11590164
    8041 1dmk:B (1.9) BS02 AP6 1.14.13.39 GO:0004517 ... P29473 11590164
    8042 1dmk:B (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11590164
    8043 1dmk:B (1.9) BS04 AP6 1.14.13.39 GO:0004517 ... P29473 11590164
    8044 1dmk:B (1.9) BS05 ITU 1.14.13.39 GO:0004517 ... P29473 11590164
    8045 1dmp:A (2.0) BS01 DMQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 8807858 PDBbind: -logKd/Ki=9.55, Ki=0.28nM
    8046 1dmp:B (2.0) BS01 DMQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 8807858 MOAD: Ki=0.28nM
    PDBbind: -logKd/Ki=9.55, Ki=0.28nM
    8047 1dmr:A (1.82) BS01 PGD 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 N/A
    8048 1dmr:A (1.82) BS02 PGD 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 N/A
    8049 1dms:A (1.88) BS01 PGD 1.7.2.3
    1.8.5.3
    GO:0009033 ... Q52675 8890912
    8050 1dms:A (1.88) BS02 PGD 1.7.2.3
    1.8.5.3
    GO:0009033 ... Q52675 8890912
    8051 1dms:A (1.88) BS03 2MO 1.7.2.3
    1.8.5.3
    GO:0009033 ... Q52675 8890912
    8052 1dmt:A (2.1) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 10669592
    8053 1dmt:A (2.1) BS02 RDF 3.4.24.11 GO:0001786 ... P08473 10669592 PDBbind: -logKd/Ki=8.70, IC50=2nM
    BindingDB: IC50=30nM
    8054 1dmu:A (2.2) BS01 dna 3.1.21.4 GO:0004519 ... O68557 9736624
    8055 1dmu:A (2.2) BS02 CA 3.1.21.4 GO:0004519 ... O68557 9736624
    8056 1dmu:A (2.2) BS03 CA 3.1.21.4 GO:0004519 ... O68557 9736624
    8057 1dmw:A (2.0) BS01 FE 1.14.16.1 GO:0004497 ... P00439 10694386
    8058 1dmw:A (2.0) BS02 HBI 1.14.16.1 GO:0004497 ... P00439 10694386
    8059 1dmx:A (2.45) BS01 ZN 4.2.1.1 GO:0004089 ... P23589 7479916
    8060 1dmx:B (2.45) BS01 ZN 4.2.1.1 GO:0004089 ... P23589 7479916
    8061 1dmy:A (2.45) BS01 ZN 4.2.1.1 GO:0004089 ... P23589 7479916
    8062 1dmy:A (2.45) BS02 AZM 4.2.1.1 GO:0004089 ... P23589 7479916 BindingDB: Ki=60nM
    8063 1dmy:B (2.45) BS01 ZN 4.2.1.1 GO:0004089 ... P23589 7479916
    8064 1dmy:B (2.45) BS02 AZM 4.2.1.1 GO:0004089 ... P23589 7479916 BindingDB: Ki=60nM
    8065 1dn2:A (2.7) BS01 peptide ? N/A P01857 10678837
    8066 1dn2:A (2.7) BS02 BMA ? N/A P01857 10678837
    8067 1dn2:A (2.7) BS03 GAL ? N/A P01857 10678837
    8068 1dn2:B (2.7) BS01 peptide ? N/A P01857 10678837
    8069 1dn2:B (2.7) BS02 BMA ? N/A P01857 10678837
    8070 1dn2:B (2.7) BS03 GAL ? N/A P01857 10678837
    8071 1dna:A (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 9753479
    8072 1dna:A (2.2) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 9753479
    8073 1dna:B (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 9753479
    8074 1dna:B (2.2) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 9753479
    8075 1dnc:A (1.7) BS01 FAD 1.8.1.7 GO:0004362 ... P00390 9546215
    8076 1dnc:A (1.7) BS02 GSH 1.8.1.7 GO:0004362 ... P00390 9546215
    8077 1dnk:A (2.3) BS01 dna 3.1.21.1 GO:0002283 ... P00639 1518054
    8078 1dnk:A (2.3) BS02 dna 3.1.21.1 GO:0002283 ... P00639 1518054
    8079 1dnl:A (1.8) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 10903950
    8080 1dnl:A (1.8) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 10903950
    8081 1dnp:A (2.3) BS01 FAD 4.1.99.3 GO:0000166 ... P00914 7604260
    8082 1dnp:A (2.3) BS02 MHF 4.1.99.3 GO:0000166 ... P00914 7604260
    8083 1dnp:B (2.3) BS01 FAD 4.1.99.3 GO:0000166 ... P00914 7604260
    8084 1dnp:B (2.3) BS02 MHF 4.1.99.3 GO:0000166 ... P00914 7604260
    8085 1dnu:A (1.85) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    8086 1dnu:B (1.85) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    8087 1dnu:C (1.85) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    8088 1dnu:C (1.85) BS02 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    8089 1dnu:C (1.85) BS03 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    8090 1dnu:C (1.85) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    8091 1dnu:C (1.85) BS05 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    8092 1dnu:D (1.85) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    8093 1dnu:D (1.85) BS02 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    8094 1dnu:D (1.85) BS03 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    8095 1dnu:D (1.85) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    8096 1dnu:D (1.85) BS05 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    8097 1dnw:A (1.9) BS01 CYN 1.11.2.2 GO:0004601 ... P05164 11705390
    8098 1dnw:A (1.9) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    8099 1dnw:B (1.9) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    8100 1dnw:C (1.9) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 11705390
    8101 1dnw:C (1.9) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    8102 1dnw:C (1.9) BS03 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    8103 1dnw:C (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    8104 1dnw:C (1.9) BS05 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    8105 1dnw:C (1.9) BS06 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    8106 1dnw:D (1.9) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    8107 1dnw:D (1.9) BS02 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    8108 1dnw:D (1.9) BS03 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    8109 1dnw:D (1.9) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    8110 1dnw:D (1.9) BS05 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    8111 1do0:A (3.0) BS01 ATP ? GO:0000287 ... P0A6H5 10693812
    8112 1do0:B (3.0) BS01 ATP ? GO:0000287 ... P0A6H5 10693812
    8113 1do0:D (3.0) BS01 ATP ? GO:0000287 ... P0A6H5 10693812
    8114 1do0:E (3.0) BS01 ATP ? GO:0000287 ... P0A6H5 10693812
    8115 1do1:A (1.5) BS01 GLC 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    8116 1do1:A (1.5) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    8117 1do2:A (4.0) BS01 ANP ? GO:0000287 ... P0A6H5 10693812
    8118 1do2:C (4.0) BS01 ANP ? GO:0000287 ... P0A6H5 10693812
    8119 1do3:A (1.55) BS01 GLC 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    8120 1do3:A (1.55) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    8121 1do4:A (1.7) BS01 GLC 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    8122 1do4:A (1.7) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    8123 1do5:A (2.75) BS01 ZN ? GO:0005507 ... O14618 10677207
    8124 1do5:B (2.75) BS01 ZN ? GO:0005507 ... O14618 10677207
    8125 1do5:C (2.75) BS01 ZN ? GO:0005507 ... O14618 10677207
    8126 1do5:D (2.75) BS01 ZN ? GO:0005507 ... O14618 10677207
    8127 1do6:A (2.0) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    8128 1do6:B (2.0) BS01 FE 1.15.1.2 GO:0005506 ... P82385 10704199
    8129 1do7:A (1.85) BS01 GLC 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    8130 1do7:A (1.85) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    8131 1do8:A (2.2) BS01 OXL 1.1.1.38 GO:0004470 ... P23368 10700286
    8132 1do8:A (2.2) BS02 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    8133 1do8:A (2.2) BS03 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    8134 1do8:A (2.2) BS04 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    8135 1do8:B (2.2) BS01 OXL 1.1.1.38 GO:0004470 ... P23368 10700286
    8136 1do8:B (2.2) BS02 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    8137 1do8:B (2.2) BS03 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    8138 1do8:B (2.2) BS04 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    8139 1do8:C (2.2) BS01 OXL 1.1.1.38 GO:0004470 ... P23368 10700286
    8140 1do8:C (2.2) BS02 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    8141 1do8:C (2.2) BS03 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    8142 1do8:C (2.2) BS04 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    8143 1do8:D (2.2) BS01 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    8144 1do8:D (2.2) BS02 OXL 1.1.1.38 GO:0004470 ... P23368 10700286
    8145 1do8:D (2.2) BS03 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    8146 1do8:D (2.2) BS04 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    8147 1do8:D (2.2) BS05 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    8148 1do9:A (-1.00) BS01 HEM ? GO:0020037 ... P00169 10651812
    8149 1doa:A (2.6) BS01 MG 3.6.5.2 GO:0000139 ... P60953 10676816
    8150 1doa:A (2.6) BS02 GDP 3.6.5.2 GO:0000139 ... P60953 10676816
    8151 1doa:A (2.6) BS03 GER 3.6.5.2 GO:0000139 ... P60953 10676816
    8152 1doa:B (2.6) BS01 GER ? GO:0001772 ... P19803 10676816
    8153 1dob:A (2.0) BS01 FAD 1.14.13.2 GO:0004497 ... P20586 7939628
    8154 1doc:A (2.0) BS01 FAD 1.14.13.2 GO:0004497 ... P20586 7939628
    8155 1dod:A (2.1) BS01 FAD 1.14.13.2 GO:0004497 ... P20586 7939628
    8156 1dod:A (2.1) BS02 DOB 1.14.13.2 GO:0004497 ... P20586 7939628
    8157 1doe:A (2.3) BS01 FAD 1.14.13.2 GO:0004497 ... P20586 7939628
    8158 1doe:A (2.3) BS02 DOB 1.14.13.2 GO:0004497 ... P20586 7939628
    8159 1dog:A (2.3) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    8160 1dog:A (2.3) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    8161 1dog:A (2.3) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    8162 1dog:A (2.3) BS04 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    8163 1dog:A (2.3) BS05 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    8164 1dog:A (2.3) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    8165 1dog:A (2.3) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    8166 1dog:A (2.3) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    8167 1dog:A (2.3) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    8168 1dog:A (2.3) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    8169 1dog:A (2.3) BS11 NOJ 3.2.1.3 GO:0004339 ... P69327 8431441 MOAD: Ki=96uM
    8170 1dog:A (2.3) BS12 NOJ 3.2.1.3 GO:0004339 ... P69327 8431441 MOAD: Ki=96uM
    8171 1doh:A (2.1) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8172 1doh:A (2.1) BS02 NID 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=2.4nM
    8173 1doh:B (2.1) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8174 1doh:B (2.1) BS02 NID 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=2.4nM
    8175 1doi:A (1.9) BS01 FES ? GO:0046872 ... P00217 8612076
    8176 1doj:A (1.7) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 11053836
    8177 1doj:A (1.7) BS02 1Z0 3.4.21.5 GO:0004252 ... P00734 11053836 PDBbind: -logKd/Ki=8.96, Ki=1.1nM
    8178 1dor:A (2.0) BS01 FMN 1.3.98.1 GO:0004152 ... A2RJT9 9032071
    8179 1dor:B (2.0) BS01 FMN 1.3.98.1 GO:0004152 ... A2RJT9 9032071
    8180 1dos:A (1.67) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 8836102
    8181 1dos:B (1.67) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 8836102
    8182 1dot:A (2.35) BS01 FE ? GO:0005576 ... P56410 15299626
    8183 1dot:A (2.35) BS02 FE ? GO:0005576 ... P56410 15299626
    8184 1dot:A (2.35) BS03 CO3 ? GO:0005576 ... P56410 15299626
    8185 1dot:A (2.35) BS04 CO3 ? GO:0005576 ... P56410 15299626
    8186 1dox:A (-1.00) BS01 FES ? GO:0005515 ... P27320 7578051
    8187 1doy:A (-1.00) BS01 FES ? GO:0005515 ... P27320 7578051
    8188 1dp0:A (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    8189 1dp0:A (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    8190 1dp0:B (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    8191 1dp0:B (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    8192 1dp0:C (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    8193 1dp0:C (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    8194 1dp0:D (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    8195 1dp0:D (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    8196 1dp4:A (2.0) BS01 CL 4.6.1.2 GO:0016020 ... P18910 10894551
    8197 1dp4:C (2.0) BS01 CL 4.6.1.2 GO:0016020 ... P18910 10894551
    8198 1dp5:A (2.2) BS01 BMA 3.4.23.25 GO:0000324 ... P07267 10655612
    8199 1dp6:A (2.3) BS01 OXY 2.7.13.3 GO:0006355 ... P23222 10747783
    8200 1dp6:A (2.3) BS02 HEM 2.7.13.3 GO:0006355 ... P23222 10747783

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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