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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2302 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 6kgx:JG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    602 6kgx:JI (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    603 6kgx:JJ (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    604 6kgx:JJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    605 6kgx:JJ (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    606 6kgx:K1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    607 6kgx:K1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    608 6kgx:K1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    609 6kgx:K1 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    610 6kgx:K1 (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    611 6kgx:K3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    612 6kgx:K3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    613 6kgx:K3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    614 6kgx:K3 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    615 6kgx:K3 (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    616 6kgx:K4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    617 6kgx:K4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    618 6kgx:K4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    619 6kgx:K4 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    620 6kgx:K5 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    621 6kgx:K5 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    622 6kgx:K5 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    623 6kgx:K6 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    624 6kgx:K8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    625 6kgx:K8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    626 6kgx:K8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    627 6kgx:K9 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    628 6kgx:K9 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    629 6kgx:K9 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    630 6kgx:K9 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    631 6kgx:KA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    632 6kgx:KA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    633 6kgx:KA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    634 6kgx:KB (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    635 6kgx:KC (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    636 6kgx:KC (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    637 6kgx:KC (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    638 6kgx:KD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    639 6kgx:KD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    640 6kgx:KD (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    641 6kgx:KD (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    642 6kgx:KD (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    643 6kgx:KE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    644 6kgx:KE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    645 6kgx:KG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    646 6kgx:KG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    647 6kgx:KJ (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    648 6kgx:KJ (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    649 6kgx:KJ (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    650 6kgx:KJ (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    651 6kgx:L1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    652 6kgx:L1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    653 6kgx:L1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    654 6kgx:L1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    655 6kgx:L2 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    656 6kgx:L3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    657 6kgx:L3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    658 6kgx:L3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    659 6kgx:L3 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    660 6kgx:L4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    661 6kgx:L4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    662 6kgx:L4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    663 6kgx:L4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    664 6kgx:L5 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    665 6kgx:L5 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    666 6kgx:L5 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    667 6kgx:L6 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    668 6kgx:L7 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    669 6kgx:L8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    670 6kgx:L8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    671 6kgx:L8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    672 6kgx:L8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    673 6kgx:L9 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    674 6kgx:L9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    675 6kgx:L9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    676 6kgx:L9 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    677 6kgx:LA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    678 6kgx:LA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    679 6kgx:LA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    680 6kgx:LA (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    681 6kgx:LB (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    682 6kgx:LC (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    683 6kgx:LC (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    684 6kgx:LC (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    685 6kgx:LD (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    686 6kgx:LD (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    687 6kgx:LD (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    688 6kgx:LD (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    689 6kgx:LE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    690 6kgx:LE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    691 6kgx:LE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    692 6kgx:LE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    693 6kgx:LF (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    694 6kgx:LG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    695 6kgx:LG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    696 6kgx:LG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    697 6kgx:LG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    698 6kgx:LI (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    699 6kgx:LJ (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    700 6kgx:LJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    701 6kgx:LJ (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    702 6kgx:LJ (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    703 6kgx:M1 (2.8) BS01 PUB N/A N/A N/A 32076272
    704 6kgx:M1 (2.8) BS02 PEB N/A N/A N/A 32076272
    705 6kgx:M1 (2.8) BS03 PEB N/A N/A N/A 32076272
    706 6kgx:M1 (2.8) BS04 PEB N/A N/A N/A 32076272
    707 6kgx:M1 (2.8) BS05 PEB N/A N/A N/A 32076272
    708 6kgx:M1 (2.8) BS06 PUB N/A N/A N/A 32076272
    709 6kgx:M1 (2.8) BS07 PEB N/A N/A N/A 32076272
    710 6kgx:M1 (2.8) BS08 PEB N/A N/A N/A 32076272
    711 6kgx:M1 (2.8) BS09 PEB N/A N/A N/A 32076272
    712 6kgx:M1 (2.8) BS10 PEB N/A N/A N/A 32076272
    713 6kgx:M2 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    714 6kgx:M3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    715 6kgx:M3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    716 6kgx:M3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    717 6kgx:M3 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    718 6kgx:M4 (2.8) BS01 PUB N/A N/A N/A 32076272
    719 6kgx:M4 (2.8) BS02 PEB N/A N/A N/A 32076272
    720 6kgx:M4 (2.8) BS03 PEB N/A N/A N/A 32076272
    721 6kgx:M4 (2.8) BS04 PEB N/A N/A N/A 32076272
    722 6kgx:M4 (2.8) BS05 PEB N/A N/A N/A 32076272
    723 6kgx:M4 (2.8) BS06 PEB N/A N/A N/A 32076272
    724 6kgx:M4 (2.8) BS07 PUB N/A N/A N/A 32076272
    725 6kgx:M4 (2.8) BS08 PEB N/A N/A N/A 32076272
    726 6kgx:M4 (2.8) BS09 PEB N/A N/A N/A 32076272
    727 6kgx:M4 (2.8) BS10 PEB N/A N/A N/A 32076272
    728 6kgx:M4 (2.8) BS11 PEB N/A N/A N/A 32076272
    729 6kgx:M6 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    730 6kgx:M8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    731 6kgx:M8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    732 6kgx:M8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    733 6kgx:M9 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    734 6kgx:M9 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    735 6kgx:M9 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    736 6kgx:M9 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    737 6kgx:MA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    738 6kgx:MA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    739 6kgx:MA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    740 6kgx:MA (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    741 6kgx:MB (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    742 6kgx:MD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    743 6kgx:MD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    744 6kgx:MD (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    745 6kgx:ME (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    746 6kgx:ME (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    747 6kgx:ME (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    748 6kgx:MF (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    749 6kgx:MG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    750 6kgx:MG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    751 6kgx:MG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    752 6kgx:MG (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    753 6kgx:MI (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    754 6kgx:MJ (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    755 6kgx:MJ (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    756 6kgx:MJ (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    757 6kgx:MJ (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    758 6kgx:N1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    759 6kgx:N1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    760 6kgx:N1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    761 6kgx:N2 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    762 6kgx:N3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    763 6kgx:N3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    764 6kgx:N3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    765 6kgx:N3 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    766 6kgx:N4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    767 6kgx:N4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    768 6kgx:N4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    769 6kgx:N6 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    770 6kgx:N7 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    771 6kgx:N8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    772 6kgx:N8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    773 6kgx:N8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    774 6kgx:N8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    775 6kgx:N9 (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    776 6kgx:N9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    777 6kgx:N9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    778 6kgx:N9 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    779 6kgx:NA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    780 6kgx:NA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    781 6kgx:NA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    782 6kgx:NA (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    783 6kgx:NB (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    784 6kgx:ND (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    785 6kgx:ND (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    786 6kgx:ND (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    787 6kgx:ND (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    788 6kgx:NE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    789 6kgx:NE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    790 6kgx:NE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    791 6kgx:NE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    792 6kgx:NF (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    793 6kgx:NG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    794 6kgx:NG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    795 6kgx:NG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    796 6kgx:NG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    797 6kgx:NI (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    798 6kgx:NJ (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    799 6kgx:NJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    800 6kgx:NJ (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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