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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6401 1cvn:B (2.3) BS01 MAN ? GO:0030246 ... P02866 8557713
    6402 1cvn:B (2.3) BS02 MAN ? GO:0030246 ... P02866 8557713
    6403 1cvn:B (2.3) BS03 MAN ? GO:0030246 ... P02866 8557713
    6404 1cvn:B (2.3) BS04 MN ? GO:0030246 ... P02866 8557713
    6405 1cvn:B (2.3) BS05 CA ? GO:0030246 ... P02866 8557713
    6406 1cvn:C (2.3) BS01 MAN ? GO:0030246 ... P02866 8557713
    6407 1cvn:C (2.3) BS02 MAN ? GO:0030246 ... P02866 8557713
    6408 1cvn:C (2.3) BS03 MAN ? GO:0030246 ... P02866 8557713
    6409 1cvn:C (2.3) BS04 MN ? GO:0030246 ... P02866 8557713
    6410 1cvn:C (2.3) BS05 CA ? GO:0030246 ... P02866 8557713
    6411 1cvn:D (2.3) BS01 MAN ? GO:0030246 ... P02866 8557713
    6412 1cvn:D (2.3) BS02 MAN ? GO:0030246 ... P02866 8557713
    6413 1cvn:D (2.3) BS03 MN ? GO:0030246 ... P02866 8557713
    6414 1cvn:D (2.3) BS04 CA ? GO:0030246 ... P02866 8557713
    6415 1cvr:A (2.0) BS01 H37 3.4.22.37 GO:0006508 ... P95493 10523290
    6416 1cvr:A (2.0) BS02 CA 3.4.22.37 GO:0006508 ... P95493 10523290
    6417 1cvr:A (2.0) BS03 CA 3.4.22.37 GO:0006508 ... P95493 10523290
    6418 1cvr:A (2.0) BS04 CA 3.4.22.37 GO:0006508 ... P95493 10523290
    6419 1cvr:A (2.0) BS05 CA 3.4.22.37 GO:0006508 ... P95493 10523290
    6420 1cvr:A (2.0) BS06 ZN 3.4.22.37 GO:0006508 ... P95493 10523290
    6421 1cvu:A (2.4) BS01 ACD 1.14.99.1 GO:0001516 ... Q05769 10811226
    6422 1cvu:B (2.4) BS01 peptide 1.14.99.1 GO:0001516 ... Q05769 10811226
    6423 1cvu:B (2.4) BS02 ACD 1.14.99.1 GO:0001516 ... Q05769 10811226
    6424 1cvw:H (2.28) BS01 0GE 3.4.21.21 GO:0004252 ... P08709 10544046
    6425 1cvw:H (2.28) BS02 CA 3.4.21.21 GO:0004252 ... P08709 10544046
    6426 1cvz:A (1.7) BS01 C48 3.4.22.2 GO:0006508 ... P00784 10600517
    6427 1cw0:A (2.3) BS01 dna 3.1.-.- GO:0003677 ... P09184 10612397
    6428 1cw0:A (2.3) BS02 dna 3.1.-.- GO:0003677 ... P09184 10612397
    6429 1cw0:A (2.3) BS03 dna 3.1.-.- GO:0003677 ... P09184 10612397
    6430 1cw0:A (2.3) BS04 ZN 3.1.-.- GO:0003677 ... P09184 10612397
    6431 1cw0:A (2.3) BS05 MG 3.1.-.- GO:0003677 ... P09184 10612397
    6432 1cw1:A (2.1) BS01 SO4 1.1.1.42 GO:0000287 ... P08200 10623532
    6433 1cw2:A (2.0) BS01 HSP 4.2.1.20 GO:0000162 ... P00929 10504236 MOAD: ic50=715nM
    PDBbind: -logKd/Ki=6.15, IC50=715nM
    6434 1cw2:B (2.0) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10504236
    6435 1cw3:A (2.58) BS01 MG 1.2.1.3 GO:0004029 ... P05091 10631996
    6436 1cw3:A (2.58) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 10631996
    6437 1cw3:B (2.58) BS01 MG 1.2.1.3 GO:0004029 ... P05091 10631996
    6438 1cw3:B (2.58) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 10631996
    6439 1cw3:C (2.58) BS01 MG 1.2.1.3 GO:0004029 ... P05091 10631996
    6440 1cw3:C (2.58) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 10631996
    6441 1cw3:D (2.58) BS01 MG 1.2.1.3 GO:0004029 ... P05091 10631996
    6442 1cw3:D (2.58) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 10631996
    6443 1cw3:E (2.58) BS01 MG 1.2.1.3 GO:0004029 ... P05091 10631996
    6444 1cw3:E (2.58) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 10631996
    6445 1cw3:F (2.58) BS01 MG 1.2.1.3 GO:0004029 ... P05091 10631996
    6446 1cw3:F (2.58) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 10631996
    6447 1cw3:G (2.58) BS01 MG 1.2.1.3 GO:0004029 ... P05091 10631996
    6448 1cw3:G (2.58) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 10631996
    6449 1cw3:H (2.58) BS01 MG 1.2.1.3 GO:0004029 ... P05091 10631996
    6450 1cw3:H (2.58) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 10631996
    6451 1cw4:A (2.1) BS01 MN 1.1.1.42 GO:0000287 ... P08200 10623532
    6452 1cw4:A (2.1) BS02 SO4 1.1.1.42 GO:0000287 ... P08200 10623532
    6453 1cw4:A (2.1) BS03 AKG 1.1.1.42 GO:0000287 ... P08200 10623532
    6454 1cw7:A (2.6) BS01 SO4 1.1.1.42 GO:0000287 ... P08200 10623532
    6455 1cwa:A (2.1) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 8263916
    6456 1cwb:A (2.2) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 8073029
    6457 1cwc:A (1.86) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 7966126
    6458 1cwd:L (2.25) BS01 peptide 2.7.10.2 N/A P06239 7532720
    6459 1cwe:A (2.3) BS01 peptide 2.7.10.2 N/A P06239 7532720
    6460 1cwe:C (2.3) BS01 peptide 2.7.10.2 N/A P06239 7532720
    6461 1cwf:A (1.86) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9769216
    6462 1cwh:A (1.86) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9769216
    6463 1cwi:A (1.9) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9769216
    6464 1cwj:A (1.8) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9769216
    6465 1cwk:A (1.8) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9769216
    6466 1cwl:A (1.8) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9769216
    6467 1cwm:A (2.0) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9769216
    6468 1cwn:A (2.0) BS01 NAP 1.1.1.19
    1.1.1.2
    1.1.1.20
    1.1.1.372
    1.1.1.54
    1.6.-.-
    GO:0004032 ... P50578 N/A
    6469 1cwo:A (1.86) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9769217
    6470 1cwp:B (3.2) BS01 rna ? GO:0003723 ... P03601 7743132
    6471 1cwp:C (3.2) BS01 rna ? GO:0003723 ... P03601 7743132
    6472 1cwq:A (2.25) BS01 RET ? GO:0005216 ... P02945 10949308
    6473 1cwq:A (2.25) BS02 RET ? GO:0005216 ... P02945 10949308
    6474 1cwq:B (2.25) BS01 RET ? GO:0005216 ... P02945 10949308
    6475 1cwq:B (2.25) BS02 RET ? GO:0005216 ... P02945 10949308
    6476 1cwr:A (2.1) BS01 SO4 3.1.3.48 GO:0004725 ... P30305 10543950
    6477 1cws:A (2.0) BS01 WO4 3.1.3.48 GO:0004725 ... P30305 10543950 BindingDB: IC50=30000nM
    6478 1cws:A (2.0) BS02 CL 3.1.3.48 GO:0004725 ... P30305 10543950
    6479 1cwt:A (2.3) BS01 SO4 3.1.3.48 GO:0004725 ... P30305 10543950
    6480 1cwt:A (2.3) BS02 SO4 3.1.3.48 GO:0004725 ... P30305 10543950
    6481 1cwt:A (2.3) BS03 CL 3.1.3.48 GO:0004725 ... P30305 10543950
    6482 1cwu:A (2.5) BS01 NAD 1.3.1.9 GO:0004318 ... P80030 10521472
    6483 1cwu:A (2.5) BS02 TDB 1.3.1.9 GO:0004318 ... P80030 10521472
    6484 1cwu:B (2.5) BS01 NAD 1.3.1.9 GO:0004318 ... P80030 10521472
    6485 1cwu:B (2.5) BS02 TDB 1.3.1.9 GO:0004318 ... P80030 10521472
    6486 1cx2:A (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    6487 1cx2:A (3.0) BS02 S58 1.14.99.1 GO:0001516 ... Q05769 8967954
    6488 1cx2:B (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    6489 1cx2:B (3.0) BS02 S58 1.14.99.1 GO:0001516 ... Q05769 8967954
    6490 1cx2:C (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    6491 1cx2:C (3.0) BS02 S58 1.14.99.1 GO:0001516 ... Q05769 8967954
    6492 1cx2:D (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    6493 1cx2:D (3.0) BS02 S58 1.14.99.1 GO:0001516 ... Q05769 8967954
    6494 1cx4:A (2.45) BS01 CMP ? GO:0001932 ... P12369 11342137
    6495 1cx4:A (2.45) BS02 CMP ? GO:0001932 ... P12369 11342137
    6496 1cx9:A (2.3) BS01 NHP 4.2.1.20 GO:0000162 ... P00929 10504236 MOAD: ic50=178nM
    PDBbind: -logKd/Ki=6.75, IC50=178nM
    6497 1cx9:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10504236
    6498 1cxa:A (2.2) BS01 IMD ? GO:0009055 ... P0C0X8 15299423
    6499 1cxa:A (2.2) BS02 HEC ? GO:0009055 ... P0C0X8 15299423
    6500 1cxc:A (1.6) BS01 HEC ? GO:0009055 ... P0C0X8 15299423
    6501 1cxe:A (2.1) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6502 1cxe:A (2.1) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6503 1cxe:A (2.1) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6504 1cxe:A (2.1) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6505 1cxe:A (2.1) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6506 1cxe:A (2.1) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6507 1cxe:A (2.1) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6508 1cxe:A (2.1) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6509 1cxe:A (2.1) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6510 1cxe:A (2.1) BS10 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    6511 1cxe:A (2.1) BS11 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    6512 1cxf:A (2.1) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6513 1cxf:A (2.1) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6514 1cxf:A (2.1) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6515 1cxf:A (2.1) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6516 1cxf:A (2.1) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6517 1cxf:A (2.1) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6518 1cxf:A (2.1) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6519 1cxf:A (2.1) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6520 1cxf:A (2.1) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6521 1cxf:A (2.1) BS10 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    6522 1cxf:A (2.1) BS11 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    6523 1cxh:A (2.41) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6524 1cxh:A (2.41) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6525 1cxh:A (2.41) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6526 1cxh:A (2.41) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6527 1cxh:A (2.41) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6528 1cxh:A (2.41) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6529 1cxh:A (2.41) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6530 1cxh:A (2.41) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6531 1cxh:A (2.41) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6532 1cxh:A (2.41) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6533 1cxh:A (2.41) BS11 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    6534 1cxh:A (2.41) BS12 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    6535 1cxi:A (2.2) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6536 1cxi:A (2.2) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6537 1cxi:A (2.2) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6538 1cxi:A (2.2) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6539 1cxi:A (2.2) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6540 1cxi:A (2.2) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    6541 1cxi:A (2.2) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    6542 1cxi:A (2.2) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    6543 1cxk:A (2.09) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6544 1cxk:A (2.09) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6545 1cxk:A (2.09) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6546 1cxk:A (2.09) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6547 1cxk:A (2.09) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6548 1cxk:A (2.09) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6549 1cxk:A (2.09) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6550 1cxk:A (2.09) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6551 1cxk:A (2.09) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6552 1cxk:A (2.09) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6553 1cxk:A (2.09) BS11 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6554 1cxk:A (2.09) BS12 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6555 1cxk:A (2.09) BS13 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6556 1cxk:A (2.09) BS14 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    6557 1cxk:A (2.09) BS15 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    6558 1cxl:A (1.81) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6559 1cxl:A (1.81) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6560 1cxl:A (1.81) BS03 G4D 2.4.1.19 GO:0003824 ... P43379 10331869
    6561 1cxl:A (1.81) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6562 1cxl:A (1.81) BS05 G4D 2.4.1.19 GO:0003824 ... P43379 10331869
    6563 1cxl:A (1.81) BS06 GLF 2.4.1.19 GO:0003824 ... P43379 10331869
    6564 1cxl:A (1.81) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6565 1cxl:A (1.81) BS08 GLF 2.4.1.19 GO:0003824 ... P43379 10331869
    6566 1cxl:A (1.81) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    6567 1cxl:A (1.81) BS10 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    6568 1cxl:A (1.81) BS11 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    6569 1cxp:A (1.8) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    6570 1cxp:B (1.8) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    6571 1cxp:C (1.8) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 10766826
    6572 1cxp:C (1.8) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 10766826
    6573 1cxp:C (1.8) BS03 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    6574 1cxp:C (1.8) BS04 CA 1.11.2.2 GO:0004601 ... P05164 10766826
    6575 1cxp:D (1.8) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 10766826
    6576 1cxp:D (1.8) BS02 FUC 1.11.2.2 GO:0004601 ... P05164 10766826
    6577 1cxp:D (1.8) BS03 CL 1.11.2.2 GO:0004601 ... P05164 10766826
    6578 1cxp:D (1.8) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    6579 1cxp:D (1.8) BS05 CA 1.11.2.2 GO:0004601 ... P05164 10766826
    6580 1cxv:A (2.0) BS01 ZN 3.4.24.- GO:0004222 ... P33435 10525409
    6581 1cxv:A (2.0) BS02 ZN 3.4.24.- GO:0004222 ... P33435 10525409
    6582 1cxv:A (2.0) BS03 CA 3.4.24.- GO:0004222 ... P33435 10525409
    6583 1cxv:A (2.0) BS04 CA 3.4.24.- GO:0004222 ... P33435 10525409
    6584 1cxv:A (2.0) BS05 CBP 3.4.24.- GO:0004222 ... P33435 10525409
    6585 1cxv:B (2.0) BS01 ZN 3.4.24.- GO:0004222 ... P33435 10525409
    6586 1cxv:B (2.0) BS02 ZN 3.4.24.- GO:0004222 ... P33435 10525409
    6587 1cxv:B (2.0) BS03 CA 3.4.24.- GO:0004222 ... P33435 10525409
    6588 1cxv:B (2.0) BS04 CA 3.4.24.- GO:0004222 ... P33435 10525409
    6589 1cxv:B (2.0) BS05 CBP 3.4.24.- GO:0004222 ... P33435 10525409
    6590 1cxx:A (-1.00) BS01 ZN ? N/A Q05158 10525413
    6591 1cxx:A (-1.00) BS02 ZN ? N/A Q05158 10525413
    6592 1cxy:A (1.65) BS01 HEM ? GO:0016020 ... P82291 10585439
    6593 1cxz:A (2.2) BS01 MG 3.6.5.2 GO:0000902 ... P61586 10619026
    6594 1cxz:A (2.2) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 10619026
    6595 1cy1:A (2.3) BS01 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    6596 1cy1:A (2.3) BS02 THP 5.6.2.1 GO:0003677 ... P06612 10504732
    6597 1cy1:A (2.3) BS03 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    6598 1cy2:A (2.3) BS01 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    6599 1cy2:A (2.3) BS02 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    6600 1cy4:A (2.55) BS01 TMP 5.6.2.1 GO:0003677 ... P06612 10504732

    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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