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BioLiP
Download all results in tab-seperated text for 459 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7dr2:dB (3.8) BS02 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    402 7dr2:dB (3.8) BS03 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    403 7dr2:dB (3.8) BS04 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    404 7dr2:dB (3.8) BS05 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    405 7dr2:dB (3.8) BS06 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    406 7dr2:dB (3.8) BS07 SF4 1.97.1.12 GO:0000287 ... P48113 N/A
    407 7dr2:dB (3.8) BS08 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    408 7dr2:dB (3.8) BS09 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    409 7dr2:dB (3.8) BS10 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    410 7dr2:dB (3.8) BS11 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    411 7dr2:dB (3.8) BS12 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    412 7dr2:dB (3.8) BS13 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    413 7dr2:dB (3.8) BS14 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    414 7dr2:dB (3.8) BS15 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    415 7dr2:dB (3.8) BS16 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    416 7dr2:dB (3.8) BS17 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    417 7dr2:dB (3.8) BS18 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    418 7dr2:dB (3.8) BS19 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    419 7dr2:dB (3.8) BS20 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    420 7dr2:dB (3.8) BS21 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    421 7dr2:dB (3.8) BS22 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    422 7dr2:dB (3.8) BS23 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    423 7dr2:dB (3.8) BS24 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    424 7dr2:dB (3.8) BS25 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    425 7dr2:dB (3.8) BS26 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    426 7dr2:dB (3.8) BS27 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    427 7dr2:dB (3.8) BS28 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    428 7dr2:dB (3.8) BS29 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    429 7dr2:dB (3.8) BS30 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    430 7dr2:dB (3.8) BS31 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    431 7dr2:dB (3.8) BS32 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    432 7dr2:dB (3.8) BS33 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    433 7dr2:dB (3.8) BS34 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    434 7dr2:dB (3.8) BS35 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    435 7dr2:dB (3.8) BS36 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    436 7dr2:dB (3.8) BS37 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    437 7dr2:dB (3.8) BS38 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    438 7dr2:dB (3.8) BS39 PQN 1.97.1.12 GO:0000287 ... P48113 N/A
    439 7dr2:dC (3.8) BS01 SF4 1.97.1.12 GO:0009055 ... P31173 N/A
    440 7dr2:dC (3.8) BS02 SF4 1.97.1.12 GO:0009055 ... P31173 N/A
    441 7dr2:dF (3.8) BS01 CLA ? GO:0009522 ... P48115 N/A
    442 7dr2:dF (3.8) BS02 CLA ? GO:0009522 ... P48115 N/A
    443 7dr2:dF (3.8) BS03 CLA ? GO:0009522 ... P48115 N/A
    444 7dr2:dF (3.8) BS04 CLA ? GO:0009522 ... P48115 N/A
    445 7dr2:dF (3.8) BS05 CLA ? GO:0009522 ... P48115 N/A
    446 7dr2:dI (3.8) BS01 CLA ? GO:0009522 ... P48116 N/A
    447 7dr2:dI (3.8) BS02 CLA ? GO:0009522 ... P48116 N/A
    448 7dr2:dJ (3.8) BS01 CLA ? GO:0009522 ... P48117 N/A
    449 7dr2:dJ (3.8) BS02 CLA ? GO:0009522 ... P48117 N/A
    450 7dr2:dJ (3.8) BS03 CLA ? GO:0009522 ... P48117 N/A
    451 7dr2:dJ (3.8) BS04 CLA ? GO:0009522 ... P48117 N/A
    452 7dr2:dJ (3.8) BS05 CLA ? GO:0009522 ... P48117 N/A
    453 7dr2:dL (3.8) BS01 CLA N/A GO:0009522 ... N/A N/A
    454 7dr2:dL (3.8) BS02 CLA N/A GO:0009522 ... N/A N/A
    455 7dr2:dL (3.8) BS03 CLA N/A GO:0009522 ... N/A N/A
    456 7dr2:dL (3.8) BS04 CLA N/A GO:0009522 ... N/A N/A
    457 7dr2:dL (3.8) BS05 CLA N/A GO:0009522 ... N/A N/A
    458 7dr2:dL (3.8) BS06 CLA N/A GO:0009522 ... N/A N/A
    459 7dr2:dL (3.8) BS07 CLA N/A GO:0009522 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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