Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42401 1q7t:A (1.9) BS02 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    42402 1q7t:B (1.9) BS01 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    42403 1q7t:B (1.9) BS02 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    42404 1q7y:1 (3.2) BS01 rna ? GO:0003735 ... P60619 12185246
    42405 1q7y:2 (3.2) BS01 rna ? GO:0003723 ... P32410 12185246
    42406 1q7y:3 (3.2) BS01 rna ? GO:0003735 ... P22452 12185246
    42407 1q7y:4 (3.2) BS01 rna ? GO:0000049 ... P32411 12185246
    42408 1q7y:4 (3.2) BS02 MG ? GO:0000049 ... P32411 12185246
    42409 1q7y:C (3.2) BS01 rna ? GO:0002181 ... P20276 12185246
    42410 1q7y:C (3.2) BS02 MG ? GO:0002181 ... P20276 12185246
    42411 1q7y:D (3.2) BS01 rna ? GO:0003723 ... P20279 12185246
    42412 1q7y:E (3.2) BS01 rna ? GO:0003723 ... P12735 12185246
    42413 1q7y:F (3.2) BS01 rna ? GO:0000049 ... P14124 12185246
    42414 1q7y:F (3.2) BS02 rna ? GO:0000049 ... P14124 12185246
    42415 1q7y:G (3.2) BS01 rna ? GO:0002181 ... P14135 12185246
    42416 1q7y:H (3.2) BS01 rna ? GO:0001682 ... P12743 12185246
    42417 1q7y:J (3.2) BS01 rna ? GO:0000027 ... P60617 12185246
    42418 1q7y:K (3.2) BS01 rna ? GO:0003729 ... P29198 12185246
    42419 1q7y:L (3.2) BS01 rna ? GO:0003735 ... P22450 12185246
    42420 1q7y:M (3.2) BS01 rna ? GO:0003735 ... P12737 12185246
    42421 1q7y:N (3.2) BS01 rna ? GO:0002181 ... P60618 12185246
    42422 1q7y:O (3.2) BS01 rna ? GO:0000027 ... P14123 12185246
    42423 1q7y:O (3.2) BS02 rna ? GO:0000027 ... P14123 12185246
    42424 1q7y:P (3.2) BS01 rna ? GO:0003723 ... P12733 12185246
    42425 1q7y:Q (3.2) BS01 rna ? GO:0003723 ... P14119 12185246
    42426 1q7y:R (3.2) BS01 rna ? GO:0003735 ... P12734 12185246
    42427 1q7y:R (3.2) BS02 rna ? GO:0003735 ... P12734 12185246
    42428 1q7y:S (3.2) BS01 rna ? GO:0002181 ... P10970 12185246
    42429 1q7y:T (3.2) BS01 rna ? GO:0000027 ... P12732 12185246
    42430 1q7y:U (3.2) BS01 rna ? GO:0002181 ... P10972 12185246
    42431 1q7y:U (3.2) BS02 MG ? GO:0002181 ... P10972 12185246
    42432 1q7y:V (3.2) BS01 rna ? GO:0003735 ... P14116 12185246
    42433 1q7y:W (3.2) BS01 rna ? GO:0003735 ... P10971 12185246
    42434 1q7y:X (3.2) BS01 rna ? GO:0000463 ... P14121 12185246
    42435 1q7y:X (3.2) BS02 rna ? GO:0000463 ... P14121 12185246
    42436 1q7y:Y (3.2) BS01 rna ? GO:0002181 ... P18138 12185246
    42437 1q7y:Z (3.2) BS01 rna ? GO:0000166 ... P12736 12185246
    42438 1q7y:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12185246
    42439 1q81:1 (2.95) BS01 rna ? GO:0003735 ... P60619 12185246
    42440 1q81:2 (2.95) BS01 rna ? GO:0003723 ... P32410 12185246
    42441 1q81:3 (2.95) BS01 rna ? GO:0003735 ... P22452 12185246
    42442 1q81:4 (2.95) BS01 rna ? GO:0000049 ... P32411 12185246
    42443 1q81:4 (2.95) BS02 MG ? GO:0000049 ... P32411 12185246
    42444 1q81:C (2.95) BS01 rna ? GO:0002181 ... P20276 12185246
    42445 1q81:C (2.95) BS02 MG ? GO:0002181 ... P20276 12185246
    42446 1q81:D (2.95) BS01 rna ? GO:0003723 ... P20279 12185246
    42447 1q81:E (2.95) BS01 rna ? GO:0003723 ... P12735 12185246
    42448 1q81:F (2.95) BS01 rna ? GO:0000049 ... P14124 12185246
    42449 1q81:F (2.95) BS02 rna ? GO:0000049 ... P14124 12185246
    42450 1q81:G (2.95) BS01 rna ? GO:0002181 ... P14135 12185246
    42451 1q81:H (2.95) BS01 rna ? GO:0001682 ... P12743 12185246
    42452 1q81:J (2.95) BS01 rna ? GO:0000027 ... P60617 12185246
    42453 1q81:K (2.95) BS01 rna ? GO:0003729 ... P29198 12185246
    42454 1q81:L (2.95) BS01 rna ? GO:0003735 ... P22450 12185246
    42455 1q81:M (2.95) BS01 rna ? GO:0003735 ... P12737 12185246
    42456 1q81:N (2.95) BS01 rna ? GO:0002181 ... P60618 12185246
    42457 1q81:O (2.95) BS01 rna ? GO:0000027 ... P14123 12185246
    42458 1q81:O (2.95) BS02 rna ? GO:0000027 ... P14123 12185246
    42459 1q81:P (2.95) BS01 rna ? GO:0003723 ... P12733 12185246
    42460 1q81:Q (2.95) BS01 rna ? GO:0003723 ... P14119 12185246
    42461 1q81:R (2.95) BS01 rna ? GO:0003735 ... P12734 12185246
    42462 1q81:R (2.95) BS02 rna ? GO:0003735 ... P12734 12185246
    42463 1q81:S (2.95) BS01 rna ? GO:0002181 ... P10970 12185246
    42464 1q81:T (2.95) BS01 rna ? GO:0000027 ... P12732 12185246
    42465 1q81:U (2.95) BS01 rna ? GO:0002181 ... P10972 12185246
    42466 1q81:U (2.95) BS02 MG ? GO:0002181 ... P10972 12185246
    42467 1q81:V (2.95) BS01 rna ? GO:0003735 ... P14116 12185246
    42468 1q81:W (2.95) BS01 rna ? GO:0003735 ... P10971 12185246
    42469 1q81:X (2.95) BS01 rna ? GO:0000463 ... P14121 12185246
    42470 1q81:X (2.95) BS02 rna ? GO:0000463 ... P14121 12185246
    42471 1q81:Y (2.95) BS01 rna ? GO:0002181 ... P18138 12185246
    42472 1q81:Z (2.95) BS01 rna ? GO:0000166 ... P12736 12185246
    42473 1q81:Z (2.95) BS02 MG ? GO:0000166 ... P12736 12185246
    42474 1q82:1 (2.98) BS01 rna ? GO:0003735 ... P60619 12185246
    42475 1q82:2 (2.98) BS01 rna ? GO:0003723 ... P32410 12185246
    42476 1q82:3 (2.98) BS01 rna ? GO:0003735 ... P22452 12185246
    42477 1q82:4 (2.98) BS01 rna ? GO:0000049 ... P32411 12185246
    42478 1q82:4 (2.98) BS02 MG ? GO:0000049 ... P32411 12185246
    42479 1q82:C (2.98) BS01 rna ? GO:0002181 ... P20276 12185246
    42480 1q82:C (2.98) BS02 MG ? GO:0002181 ... P20276 12185246
    42481 1q82:D (2.98) BS01 rna ? GO:0003723 ... P20279 12185246
    42482 1q82:E (2.98) BS01 rna ? GO:0003723 ... P12735 12185246
    42483 1q82:F (2.98) BS01 rna ? GO:0000049 ... P14124 12185246
    42484 1q82:F (2.98) BS02 rna ? GO:0000049 ... P14124 12185246
    42485 1q82:G (2.98) BS01 rna ? GO:0002181 ... P14135 12185246
    42486 1q82:H (2.98) BS01 rna ? GO:0001682 ... P12743 12185246
    42487 1q82:J (2.98) BS01 rna ? GO:0000027 ... P60617 12185246
    42488 1q82:K (2.98) BS01 rna ? GO:0003729 ... P29198 12185246
    42489 1q82:L (2.98) BS01 rna ? GO:0003735 ... P22450 12185246
    42490 1q82:M (2.98) BS01 rna ? GO:0003735 ... P12737 12185246
    42491 1q82:N (2.98) BS01 rna ? GO:0002181 ... P60618 12185246
    42492 1q82:O (2.98) BS01 rna ? GO:0000027 ... P14123 12185246
    42493 1q82:O (2.98) BS02 rna ? GO:0000027 ... P14123 12185246
    42494 1q82:P (2.98) BS01 rna ? GO:0003723 ... P12733 12185246
    42495 1q82:Q (2.98) BS01 rna ? GO:0003723 ... P14119 12185246
    42496 1q82:R (2.98) BS01 rna ? GO:0003735 ... P12734 12185246
    42497 1q82:R (2.98) BS02 rna ? GO:0003735 ... P12734 12185246
    42498 1q82:S (2.98) BS01 rna ? GO:0002181 ... P10970 12185246
    42499 1q82:T (2.98) BS01 rna ? GO:0000027 ... P12732 12185246
    42500 1q82:U (2.98) BS01 rna ? GO:0002181 ... P10972 12185246
    42501 1q82:U (2.98) BS02 MG ? GO:0002181 ... P10972 12185246
    42502 1q82:V (2.98) BS01 rna ? GO:0003735 ... P14116 12185246
    42503 1q82:W (2.98) BS01 rna ? GO:0003735 ... P10971 12185246
    42504 1q82:X (2.98) BS01 rna ? GO:0000463 ... P14121 12185246
    42505 1q82:X (2.98) BS02 rna ? GO:0000463 ... P14121 12185246
    42506 1q82:Y (2.98) BS01 rna ? GO:0002181 ... P18138 12185246
    42507 1q82:Z (2.98) BS01 rna ? GO:0000166 ... P12736 12185246
    42508 1q82:Z (2.98) BS02 MG ? GO:0000166 ... P12736 12185246
    42509 1q83:A (2.65) BS01 TZ5 3.1.1.7 GO:0004104 ... P21836 14757816 PDBbind: -logKd/Ki=12.39, Ki=410fM
    BindingDB: Ki=0.410nM, Kd=0.00041nM
    42510 1q83:B (2.65) BS01 TZ5 3.1.1.7 GO:0004104 ... P21836 14757816 BindingDB: Ki=0.410nM, Kd=0.00041nM
    42511 1q84:A (2.45) BS01 TZ4 3.1.1.7 GO:0004104 ... P21836 14757816 MOAD: Ki=8900fM
    PDBbind: -logKd/Ki=11.05, Ki=8900fM
    42512 1q84:B (2.45) BS01 TZ4 3.1.1.7 GO:0004104 ... P21836 14757816 MOAD: Ki=8900fM
    42513 1q86:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12185246
    42514 1q86:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12185246
    42515 1q86:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12185246
    42516 1q86:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12185246
    42517 1q86:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12185246
    42518 1q86:C (3.0) BS01 rna ? GO:0002181 ... P20276 12185246
    42519 1q86:C (3.0) BS02 MG ? GO:0002181 ... P20276 12185246
    42520 1q86:D (3.0) BS01 rna ? GO:0003723 ... P20279 12185246
    42521 1q86:E (3.0) BS01 rna ? GO:0003723 ... P12735 12185246
    42522 1q86:F (3.0) BS01 rna ? GO:0000049 ... P14124 12185246
    42523 1q86:F (3.0) BS02 rna ? GO:0000049 ... P14124 12185246
    42524 1q86:G (3.0) BS01 rna ? GO:0002181 ... P14135 12185246
    42525 1q86:H (3.0) BS01 rna ? GO:0001682 ... P12743 12185246
    42526 1q86:J (3.0) BS01 rna ? GO:0000027 ... P60617 12185246
    42527 1q86:K (3.0) BS01 rna ? GO:0003729 ... P29198 12185246
    42528 1q86:L (3.0) BS01 rna ? GO:0003735 ... P22450 12185246
    42529 1q86:M (3.0) BS01 rna ? GO:0003735 ... P12737 12185246
    42530 1q86:N (3.0) BS01 rna ? GO:0002181 ... P60618 12185246
    42531 1q86:O (3.0) BS01 rna ? GO:0000027 ... P14123 12185246
    42532 1q86:O (3.0) BS02 rna ? GO:0000027 ... P14123 12185246
    42533 1q86:P (3.0) BS01 rna ? GO:0003723 ... P12733 12185246
    42534 1q86:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12185246
    42535 1q86:R (3.0) BS01 rna ? GO:0003735 ... P12734 12185246
    42536 1q86:R (3.0) BS02 rna ? GO:0003735 ... P12734 12185246
    42537 1q86:S (3.0) BS01 rna ? GO:0002181 ... P10970 12185246
    42538 1q86:T (3.0) BS01 rna ? GO:0000027 ... P12732 12185246
    42539 1q86:U (3.0) BS01 rna ? GO:0002181 ... P10972 12185246
    42540 1q86:U (3.0) BS02 MG ? GO:0002181 ... P10972 12185246
    42541 1q86:V (3.0) BS01 rna ? GO:0003735 ... P14116 12185246
    42542 1q86:W (3.0) BS01 rna ? GO:0003735 ... P10971 12185246
    42543 1q86:X (3.0) BS01 rna ? GO:0000463 ... P14121 12185246
    42544 1q86:X (3.0) BS02 rna ? GO:0000463 ... P14121 12185246
    42545 1q86:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12185246
    42546 1q86:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12185246
    42547 1q86:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12185246
    42548 1q8f:A (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    42549 1q8f:B (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    42550 1q8f:C (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    42551 1q8f:D (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    42552 1q8h:A (2.0) BS01 CA ? GO:0001649 ... Q8HYY9 14586470
    42553 1q8h:A (2.0) BS02 CA ? GO:0001649 ... Q8HYY9 14586470
    42554 1q8j:A (1.9) BS01 C2F 2.1.1.13 GO:0042558 ... Q9WYA5 14752199
    42555 1q8j:B (1.9) BS01 C2F 2.1.1.13 GO:0042558 ... Q9WYA5 14752199
    42556 1q8m:A (2.6) BS01 GSH ? N/A Q9NP99 14656437
    42557 1q8o:A (2.2) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    42558 1q8o:A (2.2) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    42559 1q8o:A (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    42560 1q8o:A (2.2) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    42561 1q8o:B (2.2) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    42562 1q8o:B (2.2) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    42563 1q8o:B (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    42564 1q8o:B (2.2) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    42565 1q8p:A (1.75) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    42566 1q8p:A (1.75) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    42567 1q8p:A (1.75) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    42568 1q8p:A (1.75) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    42569 1q8p:B (1.75) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    42570 1q8p:B (1.75) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    42571 1q8p:B (1.75) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    42572 1q8p:B (1.75) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    42573 1q8q:A (2.05) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    42574 1q8q:A (2.05) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    42575 1q8q:A (2.05) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    42576 1q8q:A (2.05) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    42577 1q8q:B (2.05) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    42578 1q8q:B (2.05) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    42579 1q8q:B (2.05) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    42580 1q8q:B (2.05) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    42581 1q8s:A (2.05) BS01 MAN ? GO:0030246 ... Q8GSD2 14729339
    42582 1q8s:A (2.05) BS02 MN ? GO:0030246 ... Q8GSD2 14729339
    42583 1q8s:A (2.05) BS03 CA ? GO:0030246 ... Q8GSD2 14729339
    42584 1q8s:B (2.05) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    42585 1q8s:B (2.05) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    42586 1q8s:B (2.05) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    42587 1q8s:B (2.05) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    42588 1q8t:A (2.0) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 14656443
    42589 1q8t:A (2.0) BS02 Y27 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=17.5uM
    PDBbind: -logKd/Ki=4.76, Kd=17.5uM
    BindingDB: IC50=42000nM
    42590 1q8u:A (1.9) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 14656443
    42591 1q8u:A (1.9) BS02 H52 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=1.1uM
    PDBbind: -logKd/Ki=5.96, Kd=1.1uM
    BindingDB: IC50=394nM
    42592 1q8u:A (1.9) BS03 H52 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=1.1uM
    PDBbind: -logKd/Ki=5.96, Kd=1.1uM
    BindingDB: IC50=394nM
    42593 1q8v:A (1.85) BS01 MAN ? GO:0030246 ... Q8GSD2 14729339
    42594 1q8v:A (1.85) BS02 MN ? GO:0030246 ... Q8GSD2 14729339
    42595 1q8v:A (1.85) BS03 CA ? GO:0030246 ... Q8GSD2 14729339
    42596 1q8v:B (1.85) BS01 MAN ? GO:0030246 ... Q8GSD2 14729339
    42597 1q8v:B (1.85) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    42598 1q8v:B (1.85) BS03 MAN ? GO:0030246 ... Q8GSD2 14729339
    42599 1q8v:B (1.85) BS04 MN ? GO:0030246 ... Q8GSD2 14729339
    42600 1q8v:B (1.85) BS05 CA ? GO:0030246 ... Q8GSD2 14729339
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417