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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8oit:Aa (2.9) BS01 rna ? GO:0003747 ... O75570 37141370
    2 8oit:Aa (2.9) BS02 rna ? GO:0003747 ... O75570 37141370
    3 8oit:BA (2.9) BS01 rna ? GO:0003723 ... Q9NWU5 37141370
    4 8oit:BB (2.9) BS01 rna ? GO:0001650 ... Q16540 37141370
    5 8oit:BC (2.9) BS01 rna ? GO:0003723 ... Q96A35 37141370
    6 8oit:BD (2.9) BS01 rna ? GO:0003723 ... Q9P0M9 37141370
    7 8oit:BE (2.9) BS01 rna ? GO:0003723 ... Q13084 37141370
    8 8oit:BF (2.9) BS01 rna ? GO:0003674 ... Q9HD33 37141370
    9 8oit:BG (2.9) BS01 rna ? GO:0003735 ... Q8TCC3 37141370
    10 8oit:BH (2.9) BS01 rna ? GO:0003723 ... Q9BYC8 37141370
    11 8oit:BH (2.9) BS02 ZN ? GO:0003723 ... Q9BYC8 37141370
    12 8oit:BI (2.9) BS01 rna ? GO:0003735 ... O75394 37141370
    13 8oit:BJ (2.9) BS01 rna ? GO:0003735 ... Q9BQ48 37141370
    14 8oit:BK (2.9) BS01 rna ? GO:0003735 ... Q9NZE8 37141370
    15 8oit:BL (2.9) BS01 rna ? GO:0003723 ... Q5T653 37141370
    16 8oit:BM (2.9) BS01 rna ? GO:0003723 ... P09001 37141370
    17 8oit:BN (2.9) BS01 rna ? GO:0003723 ... Q9BYD3 37141370
    18 8oit:BO (2.9) BS01 rna ? GO:0003723 ... Q9BYD2 37141370
    19 8oit:BP (2.9) BS01 rna ? GO:0003723 ... Q7Z7H8 37141370
    20 8oit:BQ (2.9) BS01 rna ? GO:0003723 ... Q9Y3B7 37141370
    21 8oit:BR (2.9) BS01 rna ? GO:0003723 ... Q9BYD1 37141370
    22 8oit:BS (2.9) BS01 rna ? GO:0003723 ... Q6P1L8 37141370
    23 8oit:BT (2.9) BS01 rna ? GO:0003723 ... Q9P015 37141370
    24 8oit:BU (2.9) BS01 rna ? GO:0003735 ... Q9NX20 37141370
    25 8oit:BV (2.9) BS01 rna ? GO:0003735 ... Q9NRX2 37141370
    26 8oit:BW (2.9) BS01 rna ? GO:0003723 ... Q9H0U6 37141370
    27 8oit:BW (2.9) BS02 rna ? GO:0003723 ... Q9H0U6 37141370
    28 8oit:BX (2.9) BS01 rna ? GO:0003735 ... P49406 37141370
    29 8oit:BY (2.9) BS01 rna ? GO:0003723 ... Q9BYC9 37141370
    30 8oit:BZ (2.9) BS01 rna ? GO:0003723 ... Q7Z2W9 37141370
    31 8oit:Ba (2.9) BS01 rna ? GO:0003735 ... Q86TS9 37141370
    32 8oit:Bb (2.9) BS01 rna ? GO:0005515 ... Q96EL3 37141370
    33 8oit:Bc (2.9) BS01 rna ? GO:0003723 ... Q6P161 37141370
    34 8oit:Be (2.9) BS01 rna ? GO:0003735 ... Q9BQC6 37141370
    35 8oit:Bg (2.9) BS01 rna ? GO:0005515 ... Q8TAE8 37141370
    36 8oit:Bh (2.9) BS01 rna ? GO:0003735 ... Q9NVS2 37141370
    37 8oit:Bh (2.9) BS02 FS2 ? GO:0003735 ... Q9NVS2 37141370
    38 8oit:Bi (2.9) BS01 rna ? GO:0003723 ... Q9NP92 37141370
    39 8oit:Bj (2.9) BS01 rna ? GO:0003723 ... Q9BYD6 37141370
    40 8oit:Bl (2.9) BS01 rna ? GO:0003735 ... Q9P0J6 37141370
    41 8oit:Bl (2.9) BS02 ZN ? GO:0003735 ... Q9P0J6 37141370
    42 8oit:Bm (2.9) BS01 rna ? GO:0003723 ... Q9BZE1 37141370
    43 8oit:Bn (2.9) BS01 rna ? GO:0005515 ... Q96DV4 37141370
    44 8oit:Bn (2.9) BS02 rna ? GO:0005515 ... Q96DV4 37141370
    45 8oit:Bp (2.9) BS01 rna ? GO:0003723 ... Q9NQ50 37141370
    46 8oit:Bp (2.9) BS02 rna ? GO:0003723 ... Q9NQ50 37141370
    47 8oit:Bq (2.9) BS01 rna ? GO:0003723 ... Q8IXM3 37141370
    48 8oit:Br (2.9) BS01 rna ? GO:0003723 ... Q9Y6G3 37141370
    49 8oit:Bs (2.9) BS01 rna ? GO:0003723 ... Q8N983 37141370
    50 8oit:Bt (2.9) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 37141370
    51 8oit:Bu (2.9) BS01 rna ? GO:0003723 ... Q9BRJ2 37141370
    52 8oit:Bv (2.9) BS01 rna ? GO:0003674 ... Q9H2W6 37141370
    53 8oit:Bv (2.9) BS02 VAL ? GO:0003674 ... Q9H2W6 37141370
    54 8oit:Bw (2.9) BS01 rna ? GO:0005515 ... Q96GC5 37141370
    55 8oit:Bw (2.9) BS02 rna ? GO:0005515 ... Q96GC5 37141370
    56 8oit:Bx (2.9) BS01 rna ? GO:0003735 ... Q13405 37141370
    57 8oit:Bz (2.9) BS01 rna ? GO:0003735 ... Q4U2R6 37141370

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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