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BioLiP
Download all results in tab-seperated text for 252 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8evr:BW (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    202 8evr:BX (2.87) BS01 rna ? GO:0000462 ... P0CX29 37595043
    203 8evr:BY (2.87) BS01 rna ? GO:0000462 ... P0CX31 37595043
    204 8evr:BZ (2.87) BS01 rna ? N/A N/A 37595043
    205 8evr:BZ (2.87) BS02 C ? N/A N/A 37595043
    206 8evr:BZ (2.87) BS03 G ? N/A N/A 37595043
    207 8evr:BZ (2.87) BS04 U ? N/A N/A 37595043
    208 8evr:BZ (2.87) BS05 C ? N/A N/A 37595043
    209 8evr:BZ (2.87) BS06 G ? N/A N/A 37595043
    210 8evr:Ba (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    211 8evr:Ba (2.87) BS02 A ? GO:0003735 ... N/A 37595043
    212 8evr:Ba (2.87) BS03 G ? GO:0003735 ... N/A 37595043
    213 8evr:Ba (2.87) BS04 A ? GO:0003735 ... N/A 37595043
    214 8evr:Ba (2.87) BS05 U ? GO:0003735 ... N/A 37595043
    215 8evr:Ba (2.87) BS06 C ? GO:0003735 ... N/A 37595043
    216 8evr:Ba (2.87) BS07 A ? GO:0003735 ... N/A 37595043
    217 8evr:Ba (2.87) BS08 U ? GO:0003735 ... N/A 37595043
    218 8evr:Ba (2.87) BS09 A ? GO:0003735 ... N/A 37595043
    219 8evr:Ba (2.87) BS10 G ? GO:0003735 ... N/A 37595043
    220 8evr:Bb (2.87) BS01 rna ? GO:0000028 ... P35997 37595043
    221 8evr:Bc (2.87) BS01 C ? GO:0003735 ... N/A 37595043
    222 8evr:Bd (2.87) BS01 U ? GO:0003735 ... N/A 37595043
    223 8evr:Bd (2.87) BS02 G ? GO:0003735 ... N/A 37595043
    224 8evr:Bd (2.87) BS03 A ? GO:0003735 ... N/A 37595043
    225 8evr:Bd (2.87) BS04 C ? GO:0003735 ... N/A 37595043
    226 8evr:Bd (2.87) BS05 U ? GO:0003735 ... N/A 37595043
    227 8evr:Bd (2.87) BS06 G ? GO:0003735 ... N/A 37595043
    228 8evr:Bd (2.87) BS07 C ? GO:0003735 ... N/A 37595043
    229 8evr:Bd (2.87) BS08 A ? GO:0003735 ... N/A 37595043
    230 8evr:Bd (2.87) BS09 U ? GO:0003735 ... N/A 37595043
    231 8evr:Bd (2.87) BS10 C ? GO:0003735 ... N/A 37595043
    232 8evr:Bd (2.87) BS11 A ? GO:0003735 ... N/A 37595043
    233 8evr:Be (2.87) BS01 rna ? GO:0002181 ... P0CX33 37595043
    234 8evr:Bf (2.87) BS01 U ? GO:0003735 ... N/A 37595043
    235 8evr:Bf (2.87) BS02 A ? GO:0003735 ... N/A 37595043
    236 8evr:Bf (2.87) BS03 U ? GO:0003735 ... N/A 37595043
    237 8evr:Bf (2.87) BS04 U ? GO:0003735 ... N/A 37595043
    238 8evr:Bf (2.87) BS05 C ? GO:0003735 ... N/A 37595043
    239 8evr:Bf (2.87) BS06 U ? GO:0003735 ... N/A 37595043
    240 8evr:Bf (2.87) BS07 OMG ? GO:0003735 ... N/A 37595043
    241 8evr:Bf (2.87) BS08 G ? GO:0003735 ... N/A 37595043
    242 8evr:Bf (2.87) BS09 A ? GO:0003735 ... N/A 37595043
    243 8evr:Bg (2.87) BS01 A ? GO:0001965 ... P38011 37595043
    244 8evr:Bg (2.87) BS02 G ? GO:0001965 ... P38011 37595043
    245 8evr:DC (2.87) BS01 rna 3.6.5.- GO:0003746 ... P32324 37595043
    246 8evr:DC (2.87) BS02 rna 3.6.5.- GO:0003746 ... P32324 37595043
    247 8evr:DC (2.87) BS03 rna 3.6.5.- GO:0003746 ... P32324 37595043
    248 8evr:DC (2.87) BS04 GDP 3.6.5.- GO:0003746 ... P32324 37595043
    249 8evr:DC (2.87) BS05 SO1 3.6.5.- GO:0003746 ... P32324 37595043
    250 8evr:E (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    251 8evr:E (2.87) BS02 rna ? GO:0003723 ... N/A 37595043
    252 8evr:V (2.87) BS01 rna ? GO:0000027 ... P05317 37595043
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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