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BioLiP
Download all results in tab-seperated text for 308 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8cmo:A (2.81) BS53 CLA N/A GO:0009579 ... N/A N/A
    202 8cmo:A (2.81) BS54 CLA N/A GO:0009579 ... N/A N/A
    203 8cmo:B (2.81) BS01 CL0 N/A GO:0009522 ... N/A N/A
    204 8cmo:B (2.81) BS02 CLA N/A GO:0009522 ... N/A N/A
    205 8cmo:B (2.81) BS03 CLA N/A GO:0009522 ... N/A N/A
    206 8cmo:B (2.81) BS04 CLA N/A GO:0009522 ... N/A N/A
    207 8cmo:B (2.81) BS05 CLA N/A GO:0009522 ... N/A N/A
    208 8cmo:B (2.81) BS06 CLA N/A GO:0009522 ... N/A N/A
    209 8cmo:B (2.81) BS07 CLA N/A GO:0009522 ... N/A N/A
    210 8cmo:B (2.81) BS08 SF4 N/A GO:0009522 ... N/A N/A
    211 8cmo:B (2.81) BS09 CA N/A GO:0009522 ... N/A N/A
    212 8cmo:B (2.81) BS10 CLA N/A GO:0009522 ... N/A N/A
    213 8cmo:B (2.81) BS11 CLA N/A GO:0009522 ... N/A N/A
    214 8cmo:B (2.81) BS12 CLA N/A GO:0009522 ... N/A N/A
    215 8cmo:B (2.81) BS13 CLA N/A GO:0009522 ... N/A N/A
    216 8cmo:B (2.81) BS14 CLA N/A GO:0009522 ... N/A N/A
    217 8cmo:B (2.81) BS15 CLA N/A GO:0009522 ... N/A N/A
    218 8cmo:B (2.81) BS16 CLA N/A GO:0009522 ... N/A N/A
    219 8cmo:B (2.81) BS17 CLA N/A GO:0009522 ... N/A N/A
    220 8cmo:B (2.81) BS18 CLA N/A GO:0009522 ... N/A N/A
    221 8cmo:B (2.81) BS19 CLA N/A GO:0009522 ... N/A N/A
    222 8cmo:B (2.81) BS20 CLA N/A GO:0009522 ... N/A N/A
    223 8cmo:B (2.81) BS21 CLA N/A GO:0009522 ... N/A N/A
    224 8cmo:B (2.81) BS22 CLA N/A GO:0009522 ... N/A N/A
    225 8cmo:B (2.81) BS23 CLA N/A GO:0009522 ... N/A N/A
    226 8cmo:B (2.81) BS24 CLA N/A GO:0009522 ... N/A N/A
    227 8cmo:B (2.81) BS25 CLA N/A GO:0009522 ... N/A N/A
    228 8cmo:B (2.81) BS26 CLA N/A GO:0009522 ... N/A N/A
    229 8cmo:B (2.81) BS27 CLA N/A GO:0009522 ... N/A N/A
    230 8cmo:B (2.81) BS28 CLA N/A GO:0009522 ... N/A N/A
    231 8cmo:B (2.81) BS29 CLA N/A GO:0009522 ... N/A N/A
    232 8cmo:B (2.81) BS30 CLA N/A GO:0009522 ... N/A N/A
    233 8cmo:B (2.81) BS31 CLA N/A GO:0009522 ... N/A N/A
    234 8cmo:B (2.81) BS32 CLA N/A GO:0009522 ... N/A N/A
    235 8cmo:B (2.81) BS33 CLA N/A GO:0009522 ... N/A N/A
    236 8cmo:B (2.81) BS34 CLA N/A GO:0009522 ... N/A N/A
    237 8cmo:B (2.81) BS35 CLA N/A GO:0009522 ... N/A N/A
    238 8cmo:B (2.81) BS36 CLA N/A GO:0009522 ... N/A N/A
    239 8cmo:B (2.81) BS37 CLA N/A GO:0009522 ... N/A N/A
    240 8cmo:B (2.81) BS38 CLA N/A GO:0009522 ... N/A N/A
    241 8cmo:B (2.81) BS39 CLA N/A GO:0009522 ... N/A N/A
    242 8cmo:B (2.81) BS40 CLA N/A GO:0009522 ... N/A N/A
    243 8cmo:B (2.81) BS41 CLA N/A GO:0009522 ... N/A N/A
    244 8cmo:B (2.81) BS42 CLA N/A GO:0009522 ... N/A N/A
    245 8cmo:B (2.81) BS43 CLA N/A GO:0009522 ... N/A N/A
    246 8cmo:B (2.81) BS44 CLA N/A GO:0009522 ... N/A N/A
    247 8cmo:B (2.81) BS45 CLA N/A GO:0009522 ... N/A N/A
    248 8cmo:B (2.81) BS46 CLA N/A GO:0009522 ... N/A N/A
    249 8cmo:B (2.81) BS47 CLA N/A GO:0009522 ... N/A N/A
    250 8cmo:B (2.81) BS48 PQN N/A GO:0009522 ... N/A N/A
    251 8cmo:B (2.81) BS49 CLA N/A GO:0009522 ... N/A N/A
    252 8cmo:B (2.81) BS50 CLA N/A GO:0009522 ... N/A N/A
    253 8cmo:B (2.81) BS51 T7X N/A GO:0009522 ... N/A N/A
    254 8cmo:B (2.81) BS52 CLA N/A GO:0009522 ... N/A N/A
    255 8cmo:B (2.81) BS53 CLA N/A GO:0009522 ... N/A N/A
    256 8cmo:C (2.81) BS01 SF4 N/A GO:0009055 ... N/A N/A
    257 8cmo:C (2.81) BS02 SF4 N/A GO:0009055 ... N/A N/A
    258 8cmo:F (2.81) BS01 CLA N/A GO:0009522 ... N/A N/A
    259 8cmo:F (2.81) BS02 CLA N/A GO:0009522 ... N/A N/A
    260 8cmo:F (2.81) BS03 CLA N/A GO:0009522 ... N/A N/A
    261 8cmo:F (2.81) BS04 CLA N/A GO:0009522 ... N/A N/A
    262 8cmo:F (2.81) BS05 CLA N/A GO:0009522 ... N/A N/A
    263 8cmo:F (2.81) BS06 RRX N/A GO:0009522 ... N/A N/A
    264 8cmo:F (2.81) BS07 T7X N/A GO:0009522 ... N/A N/A
    265 8cmo:F (2.81) BS08 CLA N/A GO:0009522 ... N/A N/A
    266 8cmo:G (2.81) BS01 CLA N/A GO:0009522 ... N/A N/A
    267 8cmo:G (2.81) BS02 CLA N/A GO:0009522 ... N/A N/A
    268 8cmo:G (2.81) BS03 CLA N/A GO:0009522 ... N/A N/A
    269 8cmo:G (2.81) BS04 CLA N/A GO:0009522 ... N/A N/A
    270 8cmo:G (2.81) BS05 CLA N/A GO:0009522 ... N/A N/A
    271 8cmo:G (2.81) BS06 CLA N/A GO:0009522 ... N/A N/A
    272 8cmo:I (2.81) BS01 CLA N/A GO:0009522 ... N/A N/A
    273 8cmo:I (2.81) BS02 CLA N/A GO:0009522 ... N/A N/A
    274 8cmo:I (2.81) BS03 CLA N/A GO:0009522 ... N/A N/A
    275 8cmo:J (2.81) BS01 CLA N/A GO:0009522 ... N/A N/A
    276 8cmo:J (2.81) BS02 CLA N/A GO:0009522 ... N/A N/A
    277 8cmo:J (2.81) BS03 CLA N/A GO:0009522 ... N/A N/A
    278 8cmo:J (2.81) BS04 CLA N/A GO:0009522 ... N/A N/A
    279 8cmo:J (2.81) BS05 T7X N/A GO:0009522 ... N/A N/A
    280 8cmo:J (2.81) BS06 CLA N/A GO:0009522 ... N/A N/A
    281 8cmo:J (2.81) BS07 C7Z N/A GO:0009522 ... N/A N/A
    282 8cmo:K (2.81) BS01 CLA N/A GO:0009522 ... N/A N/A
    283 8cmo:K (2.81) BS02 CLA N/A GO:0009522 ... N/A N/A
    284 8cmo:K (2.81) BS03 CLA N/A GO:0009522 ... N/A N/A
    285 8cmo:K (2.81) BS04 CLA N/A GO:0009522 ... N/A N/A
    286 8cmo:K (2.81) BS05 CLA N/A GO:0009522 ... N/A N/A
    287 8cmo:K (2.81) BS06 CLA N/A GO:0009522 ... N/A N/A
    288 8cmo:K (2.81) BS07 CLA N/A GO:0009522 ... N/A N/A
    289 8cmo:L (2.81) BS01 CLA N/A GO:0009522 ... N/A N/A
    290 8cmo:L (2.81) BS02 CLA N/A GO:0009522 ... N/A N/A
    291 8cmo:L (2.81) BS03 CLA N/A GO:0009522 ... N/A N/A
    292 8cmo:L (2.81) BS04 CLA N/A GO:0009522 ... N/A N/A
    293 8cmo:L (2.81) BS05 CLA N/A GO:0009522 ... N/A N/A
    294 8cmo:L (2.81) BS06 CLA N/A GO:0009522 ... N/A N/A
    295 8cmo:Z (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    296 8cmo:Z (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    297 8cmo:Z (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    298 8cmo:Z (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    299 8cmo:Z (2.81) BS05 CLA N/A GO:0009765 ... N/A N/A
    300 8cmo:Z (2.81) BS06 CLA N/A GO:0009765 ... N/A N/A
    301 8cmo:Z (2.81) BS07 CLA N/A GO:0009765 ... N/A N/A
    302 8cmo:Z (2.81) BS08 CLA N/A GO:0009765 ... N/A N/A
    303 8cmo:Z (2.81) BS09 CHL N/A GO:0009765 ... N/A N/A
    304 8cmo:Z (2.81) BS10 CHL N/A GO:0009765 ... N/A N/A
    305 8cmo:Z (2.81) BS11 CLA N/A GO:0009765 ... N/A N/A
    306 8cmo:Z (2.81) BS12 CLA N/A GO:0009765 ... N/A N/A
    307 8cmo:Z (2.81) BS13 CLA N/A GO:0009765 ... N/A N/A
    308 8cmo:Z (2.81) BS14 CLA N/A GO:0009765 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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