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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 149 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8asl:A (3.15) BS01 peptide 1.10.3.9 GO:0005506 ... P16033 37542031
    2 8asl:A (3.15) BS02 FE2 1.10.3.9 GO:0005506 ... P16033 37542031
    3 8asl:A (3.15) BS03 CLA 1.10.3.9 GO:0005506 ... P16033 37542031
    4 8asl:A (3.15) BS04 CLA 1.10.3.9 GO:0005506 ... P16033 37542031
    5 8asl:A (3.15) BS05 PHO 1.10.3.9 GO:0005506 ... P16033 37542031
    6 8asl:A (3.15) BS06 CLA 1.10.3.9 GO:0005506 ... P16033 37542031
    7 8asl:A (3.15) BS07 CLA 1.10.3.9 GO:0005506 ... P16033 37542031
    8 8asl:A (3.15) BS08 PHO 1.10.3.9 GO:0005506 ... P16033 37542031
    9 8asl:D (3.15) BS01 peptide 1.10.3.9 GO:0005506 ... P09192 37542031
    10 8asl:D (3.15) BS02 FE2 1.10.3.9 GO:0005506 ... P09192 37542031
    11 8asl:D (3.15) BS03 CLA 1.10.3.9 GO:0005506 ... P09192 37542031
    12 8asl:D (3.15) BS04 PHO 1.10.3.9 GO:0005506 ... P09192 37542031
    13 8asl:D (3.15) BS05 CLA 1.10.3.9 GO:0005506 ... P09192 37542031
    14 8asl:D (3.15) BS06 PHO 1.10.3.9 GO:0005506 ... P09192 37542031
    15 8asl:D (3.15) BS07 CLA 1.10.3.9 GO:0005506 ... P09192 37542031
    16 8asl:D (3.15) BS08 CLA 1.10.3.9 GO:0005506 ... P09192 37542031
    17 8asl:E (3.15) BS01 peptide ? GO:0005506 ... P09190 37542031
    18 8asl:E (3.15) BS02 HEM ? GO:0005506 ... P09190 37542031
    19 8asl:a (3.15) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 37542031
    20 8asl:a (3.15) BS02 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    21 8asl:a (3.15) BS03 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    22 8asl:a (3.15) BS04 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    23 8asl:a (3.15) BS05 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    24 8asl:a (3.15) BS06 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    25 8asl:a (3.15) BS07 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    26 8asl:a (3.15) BS08 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    27 8asl:a (3.15) BS09 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    28 8asl:a (3.15) BS10 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    29 8asl:a (3.15) BS11 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    30 8asl:a (3.15) BS12 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    31 8asl:a (3.15) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    32 8asl:a (3.15) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    33 8asl:a (3.15) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    34 8asl:a (3.15) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    35 8asl:a (3.15) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    36 8asl:a (3.15) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    37 8asl:a (3.15) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    38 8asl:a (3.15) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    39 8asl:a (3.15) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    40 8asl:a (3.15) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    41 8asl:a (3.15) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    42 8asl:a (3.15) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    43 8asl:a (3.15) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    44 8asl:a (3.15) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    45 8asl:a (3.15) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    46 8asl:a (3.15) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    47 8asl:a (3.15) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    48 8asl:a (3.15) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    49 8asl:a (3.15) BS31 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    50 8asl:a (3.15) BS32 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    51 8asl:a (3.15) BS33 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    52 8asl:a (3.15) BS34 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    53 8asl:a (3.15) BS35 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    54 8asl:a (3.15) BS36 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    55 8asl:a (3.15) BS37 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    56 8asl:a (3.15) BS38 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    57 8asl:a (3.15) BS39 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    58 8asl:a (3.15) BS40 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    59 8asl:a (3.15) BS41 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    60 8asl:a (3.15) BS42 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    61 8asl:a (3.15) BS43 PQN 1.97.1.12 GO:0000287 ... P29254 37542031
    62 8asl:a (3.15) BS44 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    63 8asl:a (3.15) BS45 45D 1.97.1.12 GO:0000287 ... P29254 37542031
    64 8asl:a (3.15) BS46 SF4 1.97.1.12 GO:0000287 ... P29254 37542031
    65 8asl:a (3.15) BS47 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    66 8asl:a (3.15) BS48 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    67 8asl:a (3.15) BS49 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    68 8asl:a (3.15) BS50 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    69 8asl:a (3.15) BS51 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    70 8asl:b (3.15) BS01 CL0 1.97.1.12 GO:0000287 ... P29255 37542031
    71 8asl:b (3.15) BS02 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    72 8asl:b (3.15) BS03 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    73 8asl:b (3.15) BS04 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    74 8asl:b (3.15) BS05 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    75 8asl:b (3.15) BS06 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    76 8asl:b (3.15) BS07 SF4 1.97.1.12 GO:0000287 ... P29255 37542031
    77 8asl:b (3.15) BS08 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    78 8asl:b (3.15) BS09 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    79 8asl:b (3.15) BS10 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    80 8asl:b (3.15) BS11 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    81 8asl:b (3.15) BS12 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    82 8asl:b (3.15) BS13 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    83 8asl:b (3.15) BS14 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    84 8asl:b (3.15) BS15 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    85 8asl:b (3.15) BS16 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    86 8asl:b (3.15) BS17 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    87 8asl:b (3.15) BS18 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    88 8asl:b (3.15) BS19 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    89 8asl:b (3.15) BS20 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    90 8asl:b (3.15) BS21 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    91 8asl:b (3.15) BS22 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    92 8asl:b (3.15) BS23 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    93 8asl:b (3.15) BS24 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    94 8asl:b (3.15) BS25 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    95 8asl:b (3.15) BS26 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    96 8asl:b (3.15) BS27 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    97 8asl:b (3.15) BS28 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    98 8asl:b (3.15) BS29 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    99 8asl:b (3.15) BS30 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    100 8asl:b (3.15) BS31 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    101 8asl:b (3.15) BS32 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    102 8asl:b (3.15) BS33 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    103 8asl:b (3.15) BS34 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    104 8asl:b (3.15) BS35 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    105 8asl:b (3.15) BS36 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    106 8asl:b (3.15) BS37 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    107 8asl:b (3.15) BS38 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    108 8asl:b (3.15) BS39 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    109 8asl:b (3.15) BS40 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    110 8asl:b (3.15) BS41 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    111 8asl:b (3.15) BS42 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    112 8asl:b (3.15) BS43 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    113 8asl:b (3.15) BS44 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    114 8asl:b (3.15) BS45 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    115 8asl:b (3.15) BS46 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    116 8asl:b (3.15) BS47 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    117 8asl:b (3.15) BS48 PQN 1.97.1.12 GO:0000287 ... P29255 37542031
    118 8asl:b (3.15) BS49 ECH 1.97.1.12 GO:0000287 ... P29255 37542031
    119 8asl:b (3.15) BS50 ZEX 1.97.1.12 GO:0000287 ... P29255 37542031
    120 8asl:c (3.15) BS01 SF4 1.97.1.12 GO:0009055 ... P32422 37542031
    121 8asl:c (3.15) BS02 SF4 1.97.1.12 GO:0009055 ... P32422 37542031
    122 8asl:f (3.15) BS01 CLA ? GO:0009522 ... P29256 37542031
    123 8asl:f (3.15) BS02 CLA ? GO:0009522 ... P29256 37542031
    124 8asl:f (3.15) BS03 CLA ? GO:0009522 ... P29256 37542031
    125 8asl:f (3.15) BS04 CLA ? GO:0009522 ... P29256 37542031
    126 8asl:f (3.15) BS05 CLA ? GO:0009522 ... P29256 37542031
    127 8asl:f (3.15) BS06 CLA ? GO:0009522 ... P29256 37542031
    128 8asl:f (3.15) BS07 ZEX ? GO:0009522 ... P29256 37542031
    129 8asl:i (3.15) BS01 CLA ? GO:0009522 ... Q55330 37542031
    130 8asl:i (3.15) BS02 CLA ? GO:0009522 ... Q55330 37542031
    131 8asl:j (3.15) BS01 CLA ? GO:0009522 ... Q55329 37542031
    132 8asl:j (3.15) BS02 CLA ? GO:0009522 ... Q55329 37542031
    133 8asl:j (3.15) BS03 CLA ? GO:0009522 ... Q55329 37542031
    134 8asl:j (3.15) BS04 ZEX ? GO:0009522 ... Q55329 37542031
    135 8asl:j (3.15) BS05 CLA ? GO:0009522 ... Q55329 37542031
    136 8asl:j (3.15) BS06 CLA ? GO:0009522 ... Q55329 37542031
    137 8asl:k (3.15) BS01 CLA ? GO:0009522 ... P72712 37542031
    138 8asl:k (3.15) BS02 CLA ? GO:0009522 ... P72712 37542031
    139 8asl:k (3.15) BS03 CLA ? GO:0009522 ... P72712 37542031
    140 8asl:k (3.15) BS04 CLA ? GO:0009522 ... P72712 37542031
    141 8asl:k (3.15) BS05 CLA ? GO:0009522 ... P72712 37542031
    142 8asl:l (3.15) BS01 CLA ? GO:0005886 ... P37277 37542031
    143 8asl:l (3.15) BS02 CLA ? GO:0005886 ... P37277 37542031
    144 8asl:l (3.15) BS03 EQ3 ? GO:0005886 ... P37277 37542031
    145 8asl:l (3.15) BS04 CLA ? GO:0005886 ... P37277 37542031
    146 8asl:l (3.15) BS05 CLA ? GO:0005886 ... P37277 37542031
    147 8asl:l (3.15) BS06 CLA ? GO:0005886 ... P37277 37542031
    148 8asl:m (3.15) BS01 CLA ? GO:0009522 ... P72986 37542031
    149 8asl:m (3.15) BS02 ECH ? GO:0009522 ... P72986 37542031
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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