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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7f5s:LA (2.72) BS01 rna ? GO:0002181 ... P62917 35674491
    2 7f5s:LA (2.72) BS02 MG ? GO:0002181 ... P62917 35674491
    3 7f5s:LB (2.72) BS01 rna ? GO:0002181 ... P39023 35674491
    4 7f5s:LB (2.72) BS02 MG ? GO:0002181 ... P39023 35674491
    5 7f5s:LC (2.72) BS01 rna ? GO:0002181 ... P36578 35674491
    6 7f5s:LC (2.72) BS02 rna ? GO:0002181 ... P36578 35674491
    7 7f5s:LD (2.72) BS01 rna ? GO:0000027 ... P46777 35674491
    8 7f5s:LD (2.72) BS02 rna ? GO:0000027 ... P46777 35674491
    9 7f5s:LE (2.72) BS01 rna ? GO:0000027 ... Q02878 35674491
    10 7f5s:LF (2.72) BS01 rna ? GO:0000463 ... P18124 35674491
    11 7f5s:LF (2.72) BS02 rna ? GO:0000463 ... P18124 35674491
    12 7f5s:LG (2.72) BS01 rna ? GO:0000470 ... P62424 35674491
    13 7f5s:LG (2.72) BS02 rna ? GO:0000470 ... P62424 35674491
    14 7f5s:LH (2.72) BS01 rna ? GO:0002181 ... P32969 35674491
    15 7f5s:LI (2.72) BS01 rna ? GO:0000027 ... P27635 35674491
    16 7f5s:LI (2.72) BS02 rna ? GO:0000027 ... P27635 35674491
    17 7f5s:LJ (2.72) BS01 rna ? GO:0000027 ... P62913 35674491
    18 7f5s:LJ (2.72) BS02 rna ? GO:0000027 ... P62913 35674491
    19 7f5s:LL (2.72) BS01 rna ? GO:0001824 ... P26373 35674491
    20 7f5s:LL (2.72) BS02 rna ? GO:0001824 ... P26373 35674491
    21 7f5s:LM (2.72) BS01 rna ? GO:0002181 ... P50914 35674491
    22 7f5s:LN (2.72) BS01 rna ? GO:0002181 ... P61313 35674491
    23 7f5s:LN (2.72) BS02 rna ? GO:0002181 ... P61313 35674491
    24 7f5s:LO (2.72) BS01 rna ? GO:0002181 ... P40429 35674491
    25 7f5s:LP (2.72) BS01 rna ? GO:0002181 ... P18621 35674491
    26 7f5s:LP (2.72) BS02 rna ? GO:0002181 ... P18621 35674491
    27 7f5s:LQ (2.72) BS01 rna ? GO:0002181 ... Q07020 35674491
    28 7f5s:LR (2.72) BS01 rna ? GO:0002181 ... P84098 35674491
    29 7f5s:LS (2.72) BS01 rna ? GO:0002181 ... Q02543 35674491
    30 7f5s:LS (2.72) BS02 rna ? GO:0002181 ... Q02543 35674491
    31 7f5s:LT (2.72) BS01 rna ? GO:0002181 ... P46778 35674491
    32 7f5s:LT (2.72) BS02 rna ? GO:0002181 ... P46778 35674491
    33 7f5s:LU (2.72) BS01 rna ? GO:0002181 ... P35268 35674491
    34 7f5s:LV (2.72) BS01 rna ? GO:0000122 ... P62829 35674491
    35 7f5s:LW (2.72) BS01 rna ? GO:0000027 ... P83731 35674491
    36 7f5s:LX (2.72) BS01 rna ? GO:0000027 ... P62750 35674491
    37 7f5s:LX (2.72) BS02 rna ? GO:0000027 ... P62750 35674491
    38 7f5s:LY (2.72) BS01 rna ? GO:0002181 ... P61254 35674491
    39 7f5s:LY (2.72) BS02 rna ? GO:0002181 ... P61254 35674491
    40 7f5s:LZ (2.72) BS01 rna ? GO:0002181 ... P61353 35674491
    41 7f5s:La (2.72) BS01 rna ? GO:0002181 ... P46776 35674491
    42 7f5s:Lb (2.72) BS01 rna ? GO:0002181 ... P47914 35674491
    43 7f5s:Lc (2.72) BS01 rna ? GO:0002181 ... P62888 35674491
    44 7f5s:Ld (2.72) BS01 rna ? GO:0002181 ... P62899 35674491
    45 7f5s:Le (2.72) BS01 rna ? GO:0002181 ... P62910 35674491
    46 7f5s:Le (2.72) BS02 MG ? GO:0002181 ... P62910 35674491
    47 7f5s:Lf (2.72) BS01 rna ? GO:0000049 ... P18077 35674491
    48 7f5s:Lf (2.72) BS02 MG ? GO:0000049 ... P18077 35674491
    49 7f5s:Lg (2.72) BS01 rna ? GO:0002181 ... P49207 35674491
    50 7f5s:Lg (2.72) BS02 MG ? GO:0002181 ... P49207 35674491
    51 7f5s:Lg (2.72) BS03 ZN ? GO:0002181 ... P49207 35674491
    52 7f5s:Lh (2.72) BS01 rna ? GO:0000463 ... P42766 35674491
    53 7f5s:Lh (2.72) BS02 rna ? GO:0000463 ... P42766 35674491
    54 7f5s:Li (2.72) BS01 rna ? GO:0002181 ... Q9Y3U8 35674491
    55 7f5s:Lj (2.72) BS01 rna ? GO:0002181 ... P61927 35674491
    56 7f5s:Lj (2.72) BS02 rna ? GO:0002181 ... P61927 35674491
    57 7f5s:Lj (2.72) BS03 ZN ? GO:0002181 ... P61927 35674491
    58 7f5s:Lk (2.72) BS01 rna ? GO:0001501 ... P63173 35674491
    59 7f5s:Ll (2.72) BS01 rna ? GO:0002181 ... P62891 35674491
    60 7f5s:Ll (2.72) BS02 rna ? GO:0002181 ... P62891 35674491
    61 7f5s:Lm (2.72) BS01 rna ? GO:0002181 ... P62987 35674491
    62 7f5s:Lm (2.72) BS02 ZN ? GO:0002181 ... P62987 35674491
    63 7f5s:Lo (2.72) BS01 rna ? GO:0002181 ... P83881 35674491
    64 7f5s:Lp (2.72) BS01 rna ? GO:0002181 ... P61513 35674491
    65 7f5s:Lp (2.72) BS02 ZN ? GO:0002181 ... P61513 35674491
    66 7f5s:Lr (2.72) BS01 rna ? GO:0002181 ... P46779 35674491
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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