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BioLiP
Download all results in tab-seperated text for 223 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6zj3:SP (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    202 6zj3:SQ (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    203 6zj3:SR (3.15) BS01 rna N/A GO:0003676 ... N/A 33091122
    204 6zj3:SS (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    205 6zj3:ST (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    206 6zj3:ST (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    207 6zj3:SU (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    208 6zj3:SV (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    209 6zj3:SW (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    210 6zj3:SW (3.15) BS02 rna N/A GO:0003723 ... N/A 33091122
    211 6zj3:SX (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    212 6zj3:SZ (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    213 6zj3:Sa (3.15) BS01 rna N/A N/A N/A 33091122
    214 6zj3:Sa (3.15) BS02 rna N/A N/A N/A 33091122
    215 6zj3:Sb (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    216 6zj3:Sb (3.15) BS02 ZN N/A GO:0003735 ... N/A 33091122
    217 6zj3:Sc (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    218 6zj3:Sd (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    219 6zj3:Se (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    220 6zj3:Se (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    221 6zj3:Sf (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    222 6zj3:Sg (3.15) BS01 rna N/A GO:0003676 ... N/A 33091122
    223 6zj3:Sh (3.15) BS01 rna N/A GO:0043022 ... N/A 33091122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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