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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ysu:0 (3.7) BS01 rna ? GO:0000027 ... P0A7N4 32796827
    2 6ysu:1 (3.7) BS01 rna ? GO:0000027 ... P0A7N9 32796827
    3 6ysu:2 (3.7) BS01 rna ? GO:0002181 ... P0A7P5 32796827
    4 6ysu:3 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 32796827
    5 6ysu:4 (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 32796827
    6 6ysu:4 (3.7) BS02 ZN ? GO:0002181 ... P0A7Q6 32796827
    7 6ysu:5 (3.7) BS01 rna N/A GO:0003735 ... N/A 32796827
    8 6ysu:C (3.7) BS01 rna ? GO:0000027 ... P60422 32796827
    9 6ysu:C (3.7) BS02 rna ? GO:0000027 ... P60422 32796827
    10 6ysu:C (3.7) BS03 MG ? GO:0000027 ... P60422 32796827
    11 6ysu:D (3.7) BS01 rna ? GO:0000027 ... P60438 32796827
    12 6ysu:E (3.7) BS01 rna ? GO:0001070 ... P60723 32796827
    13 6ysu:F (3.7) BS01 rna ? GO:0000027 ... P62399 32796827
    14 6ysu:F (3.7) BS02 rna ? GO:0000027 ... P62399 32796827
    15 6ysu:F (3.7) BS03 rna ? GO:0000027 ... P62399 32796827
    16 6ysu:G (3.7) BS01 rna ? GO:0000027 ... P0AG55 32796827
    17 6ysu:H (3.7) BS01 rna ? GO:0002181 ... P0A7R1 32796827
    18 6ysu:I (3.7) BS01 rna ? GO:0000027 ... P0A7J7 32796827
    19 6ysu:J (3.7) BS01 rna ? GO:0002181 ... P0AA10 32796827
    20 6ysu:K (3.7) BS01 rna ? GO:0002181 ... P0ADY3 32796827
    21 6ysu:K (3.7) BS02 rna ? GO:0002181 ... P0ADY3 32796827
    22 6ysu:L (3.7) BS01 rna ? GO:0002181 ... P02413 32796827
    23 6ysu:M (3.7) BS01 rna ? GO:0000027 ... P0ADY7 32796827
    24 6ysu:M (3.7) BS02 rna ? GO:0000027 ... P0ADY7 32796827
    25 6ysu:N (3.7) BS01 rna ? GO:0000027 ... P0AG44 32796827
    26 6ysu:O (3.7) BS01 rna ? GO:0002181 ... P0C018 32796827
    27 6ysu:O (3.7) BS02 rna ? GO:0002181 ... P0C018 32796827
    28 6ysu:P (3.7) BS01 rna ? GO:0000027 ... P0A7K6 32796827
    29 6ysu:P (3.7) BS02 rna ? GO:0000027 ... P0A7K6 32796827
    30 6ysu:Q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 32796827
    31 6ysu:R (3.7) BS01 rna ? GO:0002181 ... P0AG48 32796827
    32 6ysu:S (3.7) BS01 rna ? GO:0002181 ... P61175 32796827
    33 6ysu:T (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32796827
    34 6ysu:U (3.7) BS01 rna ? GO:0000027 ... P60624 32796827
    35 6ysu:V (3.7) BS01 rna ? GO:0000027 ... P68919 32796827
    36 6ysu:W (3.7) BS01 rna ? GO:0000027 ... P0A7L8 32796827
    37 6ysu:W (3.7) BS02 rna ? GO:0000027 ... P0A7L8 32796827
    38 6ysu:X (3.7) BS01 rna ? GO:0000027 ... P0A7M2 32796827
    39 6ysu:Y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 32796827
    40 6ysu:Z (3.7) BS01 rna ? GO:0000027 ... P0AG51 32796827
    41 6ysu:b (3.7) BS01 rna ? GO:0003735 ... C3TPN2 32796827
    42 6ysu:c (3.7) BS01 rna ? GO:0000028 ... C3SQX2 32796827
    43 6ysu:d (3.7) BS01 rna ? GO:0003723 ... C3SR62 32796827
    44 6ysu:e (3.7) BS01 rna ? GO:0000028 ... C3SR27 32796827
    45 6ysu:f (3.7) BS01 rna N/A GO:0003735 ... N/A 32796827
    46 6ysu:g (3.7) BS01 rna N/A GO:0003723 ... N/A 32796827
    47 6ysu:h (3.7) BS01 rna ? GO:0000028 ... C3SR12 32796827
    48 6ysu:i (3.7) BS01 rna ? GO:0000028 ... C3SRY2 32796827
    49 6ysu:j (3.7) BS01 rna ? GO:0000028 ... C3SQT7 32796827
    50 6ysu:k (3.7) BS01 rna ? GO:0000028 ... C3SR57 32796827
    51 6ysu:l (3.7) BS01 rna ? GO:0000028 ... C3SQR7 32796827
    52 6ysu:m (3.7) BS01 rna ? GO:0000028 ... C3SR52 32796827
    53 6ysu:m (3.7) BS02 rna ? GO:0000028 ... C3SR52 32796827
    54 6ysu:m (3.7) BS03 MG ? GO:0000028 ... C3SR52 32796827
    55 6ysu:n (3.7) BS01 rna ? GO:0003735 ... C3SR07 32796827
    56 6ysu:o (3.7) BS01 rna ? GO:0000028 ... C3SSQ7 32796827
    57 6ysu:o (3.7) BS02 rna ? GO:0000028 ... C3SSQ7 32796827
    58 6ysu:p (3.7) BS01 rna ? GO:0000028 ... C3SYP2 32796827
    59 6ysu:q (3.7) BS01 rna ? GO:0000028 ... C3SQY7 32796827
    60 6ysu:r (3.7) BS01 rna ? GO:0000028 ... C3SFP7 32796827
    61 6ysu:s (3.7) BS01 rna ? GO:0000028 ... C3SQW2 32796827
    62 6ysu:t (3.7) BS01 rna ? GO:0000028 ... C3TRH7 32796827
    63 6ysu:u (3.7) BS01 rna ? GO:0000028 ... C3STZ7 32796827
    64 6ysu:y (3.7) BS01 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    65 6ysu:y (3.7) BS02 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    66 6ysu:y (3.7) BS03 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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