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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6o9l:0 (7.2) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 31110295
    2 6o9l:4 (7.2) BS01 ZN ? GO:0000438 ... Q13889 31110295
    3 6o9l:6 (7.2) BS01 ZN ? GO:0000438 ... Q13888 31110295
    4 6o9l:6 (7.2) BS02 ZN ? GO:0000438 ... Q13888 31110295
    5 6o9l:7 (7.2) BS01 dna 5.6.2.4 GO:0000112 ... P19447 31110295
    6 6o9l:7 (7.2) BS02 dna 5.6.2.4 GO:0000112 ... P19447 31110295
    7 6o9l:A (7.2) BS01 MG 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 31110295
    8 6o9l:A (7.2) BS02 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 31110295
    9 6o9l:A (7.2) BS03 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 31110295
    10 6o9l:J (7.2) BS01 ZN ? GO:0000428 ... P62875 31110295
    11 6o9l:L (7.2) BS01 ZN ? GO:0000428 ... P53803 31110295
    12 6o9l:M (7.2) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 31110295
    13 6o9l:M (7.2) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 31110295
    14 6o9l:M (7.2) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 31110295
    15 6o9l:N (7.2) BS01 dna ? GO:0000979 ... P52655 31110295
    16 6o9l:P (7.2) BS01 dna ? GO:0000785 ... P20226 31110295
    17 6o9l:P (7.2) BS02 dna ? GO:0000785 ... P20226 31110295
    18 6o9l:Q (7.2) BS01 ZN ? GO:0001113 ... P29083 31110295
    19 6o9l:S (7.2) BS01 dna ? GO:0001091 ... P35269 31110295
    20 6o9l:T (7.2) BS01 dna 3.6.4.12 GO:0003677 ... P13984 31110295
    21 6o9l:T (7.2) BS02 dna 3.6.4.12 GO:0003677 ... P13984 31110295
    22 6o9l:U (7.2) BS01 ZN ? GO:0003676 ... P23193 31110295
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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