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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ha1:0 (3.1) BS01 rna ? GO:0003735 ... O34687 30126986
    2 6ha1:1 (3.1) BS01 rna ? GO:0003735 ... P56849 30126986
    3 6ha1:2 (3.1) BS01 rna ? GO:0003735 ... P05647 30126986
    4 6ha1:3 (3.1) BS01 rna ? GO:0003735 ... P55874 30126986
    5 6ha1:4 (3.1) BS01 rna ? GO:0003735 ... P20278 30126986
    6 6ha1:6 (3.1) BS01 rna ? GO:0003735 ... Q03223 30126986
    7 6ha1:C (3.1) BS01 rna ? GO:0002181 ... P42919 30126986
    8 6ha1:C (3.1) BS02 rna ? GO:0002181 ... P42919 30126986
    9 6ha1:D (3.1) BS01 rna ? GO:0003735 ... P42920 30126986
    10 6ha1:E (3.1) BS01 rna ? GO:0003735 ... P42921 30126986
    11 6ha1:F (3.1) BS01 rna ? GO:0000049 ... P12877 30126986
    12 6ha1:F (3.1) BS02 rna ? GO:0000049 ... P12877 30126986
    13 6ha1:F (3.1) BS03 rna ? GO:0000049 ... P12877 30126986
    14 6ha1:G (3.1) BS01 rna ? GO:0002181 ... P46898 30126986
    15 6ha1:J (3.1) BS01 rna ? GO:0003729 ... P70974 30126986
    16 6ha1:K (3.1) BS01 rna ? GO:0003735 ... P12875 30126986
    17 6ha1:K (3.1) BS02 rna ? GO:0003735 ... P12875 30126986
    18 6ha1:L (3.1) BS01 rna ? GO:0003735 ... P19946 30126986
    19 6ha1:M (3.1) BS01 rna ? GO:0000049 ... P14577 30126986
    20 6ha1:M (3.1) BS02 rna ? GO:0000049 ... P14577 30126986
    21 6ha1:M (3.1) BS03 rna ? GO:0000049 ... P14577 30126986
    22 6ha1:N (3.1) BS01 rna ? GO:0003735 ... P20277 30126986
    23 6ha1:O (3.1) BS01 rna ? GO:0003735 ... P46899 30126986
    24 6ha1:O (3.1) BS02 rna ? GO:0003735 ... P46899 30126986
    25 6ha1:P (3.1) BS01 rna ? GO:0003735 ... O31742 30126986
    26 6ha1:P (3.1) BS02 rna ? GO:0003735 ... O31742 30126986
    27 6ha1:Q (3.1) BS01 rna ? GO:0000027 ... P55873 30126986
    28 6ha1:R (3.1) BS01 rna ? GO:0003723 ... P26908 30126986
    29 6ha1:S (3.1) BS01 rna ? GO:0003735 ... P42060 30126986
    30 6ha1:T (3.1) BS01 rna ? GO:0000027 ... P42924 30126986
    31 6ha1:U (3.1) BS01 rna ? GO:0003677 ... P0CI78 30126986
    32 6ha1:W (3.1) BS01 rna ? GO:0003735 ... P05657 30126986
    33 6ha1:W (3.1) BS02 rna ? GO:0003735 ... P05657 30126986
    34 6ha1:W (3.1) BS03 rna ? GO:0003735 ... P05657 30126986
    35 6ha1:X (3.1) BS01 rna ? GO:0003735 ... P37807 30126986
    36 6ha1:Y (3.1) BS01 rna ? GO:0003735 ... P12873 30126986
    37 6ha1:Z (3.1) BS01 rna ? GO:0003735 ... P19947 30126986
    38 6ha1:Z (3.1) BS02 rna ? GO:0003735 ... P19947 30126986
    39 6ha1:b (3.1) BS01 rna ? GO:0003735 ... P21464 30126986
    40 6ha1:c (3.1) BS01 rna ? GO:0003676 ... P21465 30126986
    41 6ha1:d (3.1) BS01 rna ? GO:0003723 ... P21466 30126986
    42 6ha1:e (3.1) BS01 rna ? GO:0003723 ... P21467 30126986
    43 6ha1:f (3.1) BS01 rna ? GO:0003735 ... P21468 30126986
    44 6ha1:g (3.1) BS01 rna ? GO:0000028 ... P21469 30126986
    45 6ha1:h (3.1) BS01 rna ? GO:0003735 ... P12879 30126986
    46 6ha1:i (3.1) BS01 rna ? GO:0003723 ... P21470 30126986
    47 6ha1:j (3.1) BS01 rna ? GO:0000049 ... P21471 30126986
    48 6ha1:k (3.1) BS01 rna ? GO:0003735 ... P04969 30126986
    49 6ha1:l (3.1) BS01 rna ? GO:0000049 ... P21472 30126986
    50 6ha1:m (3.1) BS01 rna ? GO:0000049 ... P20282 30126986
    51 6ha1:n (3.1) BS01 rna ? GO:0003735 ... P12878 30126986
    52 6ha1:o (3.1) BS01 rna ? GO:0003735 ... P21473 30126986
    53 6ha1:o (3.1) BS02 rna ? GO:0003735 ... P21473 30126986
    54 6ha1:p (3.1) BS01 rna ? GO:0003735 ... P21474 30126986
    55 6ha1:q (3.1) BS01 rna ? GO:0003735 ... P12874 30126986
    56 6ha1:r (3.1) BS01 rna ? GO:0003735 ... P21475 30126986
    57 6ha1:s (3.1) BS01 rna ? GO:0000028 ... P21476 30126986
    58 6ha1:t (3.1) BS01 rna ? GO:0003723 ... P21477 30126986
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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