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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5oy0:B (2.501) BS17 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    202 5oy0:B (2.501) BS18 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    203 5oy0:B (2.501) BS19 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    204 5oy0:B (2.501) BS20 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    205 5oy0:B (2.501) BS21 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    206 5oy0:B (2.501) BS22 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    207 5oy0:B (2.501) BS23 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    208 5oy0:B (2.501) BS24 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    209 5oy0:B (2.501) BS25 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    210 5oy0:B (2.501) BS26 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    211 5oy0:B (2.501) BS27 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    212 5oy0:B (2.501) BS28 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    213 5oy0:B (2.501) BS29 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    214 5oy0:B (2.501) BS30 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    215 5oy0:B (2.501) BS31 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    216 5oy0:B (2.501) BS32 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    217 5oy0:B (2.501) BS33 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    218 5oy0:B (2.501) BS34 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    219 5oy0:B (2.501) BS35 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    220 5oy0:B (2.501) BS36 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    221 5oy0:B (2.501) BS37 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    222 5oy0:B (2.501) BS38 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    223 5oy0:B (2.501) BS39 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    224 5oy0:B (2.501) BS40 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    225 5oy0:B (2.501) BS41 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    226 5oy0:B (2.501) BS42 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    227 5oy0:B (2.501) BS43 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    228 5oy0:B (2.501) BS44 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    229 5oy0:B (2.501) BS45 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    230 5oy0:B (2.501) BS46 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    231 5oy0:B (2.501) BS47 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    232 5oy0:B (2.501) BS48 PQN 1.97.1.12 GO:0000287 ... P29255 29414678
    233 5oy0:B (2.501) BS49 ECH 1.97.1.12 GO:0000287 ... P29255 29414678
    234 5oy0:B (2.501) BS50 CA 1.97.1.12 GO:0000287 ... P29255 29414678
    235 5oy0:B (2.501) BS51 MG 1.97.1.12 GO:0000287 ... P29255 29414678
    236 5oy0:B (2.501) BS52 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    237 5oy0:B (2.501) BS53 ZEX 1.97.1.12 GO:0000287 ... P29255 29414678
    238 5oy0:C (2.501) BS01 SF4 1.97.1.12 GO:0009055 ... P32422 29414678
    239 5oy0:C (2.501) BS02 SF4 1.97.1.12 GO:0009055 ... P32422 29414678
    240 5oy0:F (2.501) BS01 CLA ? GO:0009522 ... P29256 29414678
    241 5oy0:F (2.501) BS02 CLA ? GO:0009522 ... P29256 29414678
    242 5oy0:F (2.501) BS03 CLA ? GO:0009522 ... P29256 29414678
    243 5oy0:F (2.501) BS04 CLA ? GO:0009522 ... P29256 29414678
    244 5oy0:F (2.501) BS05 CLA ? GO:0009522 ... P29256 29414678
    245 5oy0:F (2.501) BS06 CLA ? GO:0009522 ... P29256 29414678
    246 5oy0:F (2.501) BS07 CLA ? GO:0009522 ... P29256 29414678
    247 5oy0:F (2.501) BS08 ZEX ? GO:0009522 ... P29256 29414678
    248 5oy0:I (2.501) BS01 CLA ? GO:0009522 ... Q55330 29414678
    249 5oy0:I (2.501) BS02 CLA ? GO:0009522 ... Q55330 29414678
    250 5oy0:I (2.501) BS03 CLA ? GO:0009522 ... Q55330 29414678
    251 5oy0:I (2.501) BS04 CLA ? GO:0009522 ... Q55330 29414678
    252 5oy0:J (2.501) BS01 CLA ? GO:0009522 ... Q55329 29414678
    253 5oy0:J (2.501) BS02 CLA ? GO:0009522 ... Q55329 29414678
    254 5oy0:J (2.501) BS03 CLA ? GO:0009522 ... Q55329 29414678
    255 5oy0:J (2.501) BS04 CLA ? GO:0009522 ... Q55329 29414678
    256 5oy0:J (2.501) BS05 ZEX ? GO:0009522 ... Q55329 29414678
    257 5oy0:J (2.501) BS06 CLA ? GO:0009522 ... Q55329 29414678
    258 5oy0:K (2.501) BS01 CLA ? GO:0009522 ... P74564 29414678
    259 5oy0:K (2.501) BS02 CLA ? GO:0009522 ... P74564 29414678
    260 5oy0:K (2.501) BS03 CLA ? GO:0009522 ... P74564 29414678
    261 5oy0:K (2.501) BS04 CLA ? GO:0009522 ... P74564 29414678
    262 5oy0:K (2.501) BS05 CLA ? GO:0009522 ... P74564 29414678
    263 5oy0:L (2.501) BS01 CLA ? GO:0005886 ... P37277 29414678
    264 5oy0:L (2.501) BS02 CLA ? GO:0005886 ... P37277 29414678
    265 5oy0:L (2.501) BS03 CLA ? GO:0005886 ... P37277 29414678
    266 5oy0:L (2.501) BS04 EQ3 ? GO:0005886 ... P37277 29414678
    267 5oy0:L (2.501) BS05 CA ? GO:0005886 ... P37277 29414678
    268 5oy0:L (2.501) BS06 CLA ? GO:0005886 ... P37277 29414678
    269 5oy0:L (2.501) BS07 CLA ? GO:0005886 ... P37277 29414678
    270 5oy0:L (2.501) BS08 CLA ? GO:0005886 ... P37277 29414678
    271 5oy0:L (2.501) BS09 CLA ? GO:0005886 ... P37277 29414678
    272 5oy0:L (2.501) BS10 CLA ? GO:0005886 ... P37277 29414678
    273 5oy0:M (2.501) BS01 CLA ? GO:0009522 ... P72986 29414678
    274 5oy0:M (2.501) BS02 CLA ? GO:0009522 ... P72986 29414678
    275 5oy0:M (2.501) BS03 ECH ? GO:0009522 ... P72986 29414678
    276 5oy0:a (2.501) BS01 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    277 5oy0:a (2.501) BS02 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    278 5oy0:a (2.501) BS03 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    279 5oy0:a (2.501) BS04 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    280 5oy0:a (2.501) BS05 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    281 5oy0:a (2.501) BS06 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    282 5oy0:a (2.501) BS07 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    283 5oy0:a (2.501) BS08 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    284 5oy0:a (2.501) BS09 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    285 5oy0:a (2.501) BS10 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    286 5oy0:a (2.501) BS11 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    287 5oy0:a (2.501) BS12 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    288 5oy0:a (2.501) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    289 5oy0:a (2.501) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    290 5oy0:a (2.501) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    291 5oy0:a (2.501) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    292 5oy0:a (2.501) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    293 5oy0:a (2.501) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    294 5oy0:a (2.501) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    295 5oy0:a (2.501) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    296 5oy0:a (2.501) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    297 5oy0:a (2.501) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    298 5oy0:a (2.501) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    299 5oy0:a (2.501) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    300 5oy0:a (2.501) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    301 5oy0:a (2.501) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    302 5oy0:a (2.501) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    303 5oy0:a (2.501) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    304 5oy0:a (2.501) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    305 5oy0:a (2.501) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    306 5oy0:a (2.501) BS31 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    307 5oy0:a (2.501) BS32 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    308 5oy0:a (2.501) BS33 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    309 5oy0:a (2.501) BS34 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    310 5oy0:a (2.501) BS35 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    311 5oy0:a (2.501) BS36 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    312 5oy0:a (2.501) BS37 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    313 5oy0:a (2.501) BS38 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    314 5oy0:a (2.501) BS39 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    315 5oy0:a (2.501) BS40 PQN 1.97.1.12 GO:0000287 ... P29254 29414678
    316 5oy0:a (2.501) BS41 SF4 1.97.1.12 GO:0000287 ... P29254 29414678
    317 5oy0:a (2.501) BS42 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    318 5oy0:a (2.501) BS43 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    319 5oy0:a (2.501) BS44 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    320 5oy0:a (2.501) BS45 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    321 5oy0:a (2.501) BS46 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    322 5oy0:a (2.501) BS47 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    323 5oy0:a (2.501) BS48 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    324 5oy0:a (2.501) BS49 ECH 1.97.1.12 GO:0000287 ... P29254 29414678
    325 5oy0:a (2.501) BS50 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    326 5oy0:a (2.501) BS51 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    327 5oy0:a (2.501) BS52 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    328 5oy0:a (2.501) BS53 CLA 1.97.1.12 GO:0000287 ... P29254 29414678
    329 5oy0:b (2.501) BS01 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    330 5oy0:b (2.501) BS02 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    331 5oy0:b (2.501) BS03 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    332 5oy0:b (2.501) BS04 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    333 5oy0:b (2.501) BS05 SF4 1.97.1.12 GO:0000287 ... P29255 29414678
    334 5oy0:b (2.501) BS06 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    335 5oy0:b (2.501) BS07 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    336 5oy0:b (2.501) BS08 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    337 5oy0:b (2.501) BS09 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    338 5oy0:b (2.501) BS10 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    339 5oy0:b (2.501) BS11 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    340 5oy0:b (2.501) BS12 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    341 5oy0:b (2.501) BS13 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    342 5oy0:b (2.501) BS14 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    343 5oy0:b (2.501) BS15 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    344 5oy0:b (2.501) BS16 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    345 5oy0:b (2.501) BS17 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    346 5oy0:b (2.501) BS18 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    347 5oy0:b (2.501) BS19 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    348 5oy0:b (2.501) BS20 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    349 5oy0:b (2.501) BS21 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    350 5oy0:b (2.501) BS22 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    351 5oy0:b (2.501) BS23 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    352 5oy0:b (2.501) BS24 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    353 5oy0:b (2.501) BS25 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    354 5oy0:b (2.501) BS26 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    355 5oy0:b (2.501) BS27 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    356 5oy0:b (2.501) BS28 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    357 5oy0:b (2.501) BS29 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    358 5oy0:b (2.501) BS30 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    359 5oy0:b (2.501) BS31 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    360 5oy0:b (2.501) BS32 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    361 5oy0:b (2.501) BS33 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    362 5oy0:b (2.501) BS34 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    363 5oy0:b (2.501) BS35 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    364 5oy0:b (2.501) BS36 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    365 5oy0:b (2.501) BS37 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    366 5oy0:b (2.501) BS38 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    367 5oy0:b (2.501) BS39 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    368 5oy0:b (2.501) BS40 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    369 5oy0:b (2.501) BS41 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    370 5oy0:b (2.501) BS42 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    371 5oy0:b (2.501) BS43 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    372 5oy0:b (2.501) BS44 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    373 5oy0:b (2.501) BS45 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    374 5oy0:b (2.501) BS46 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    375 5oy0:b (2.501) BS47 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    376 5oy0:b (2.501) BS48 PQN 1.97.1.12 GO:0000287 ... P29255 29414678
    377 5oy0:b (2.501) BS49 ECH 1.97.1.12 GO:0000287 ... P29255 29414678
    378 5oy0:b (2.501) BS50 CA 1.97.1.12 GO:0000287 ... P29255 29414678
    379 5oy0:b (2.501) BS51 MG 1.97.1.12 GO:0000287 ... P29255 29414678
    380 5oy0:b (2.501) BS52 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    381 5oy0:b (2.501) BS53 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    382 5oy0:b (2.501) BS54 CLA 1.97.1.12 GO:0000287 ... P29255 29414678
    383 5oy0:b (2.501) BS55 ZEX 1.97.1.12 GO:0000287 ... P29255 29414678
    384 5oy0:c (2.501) BS01 SF4 1.97.1.12 GO:0009055 ... P32422 29414678
    385 5oy0:c (2.501) BS02 SF4 1.97.1.12 GO:0009055 ... P32422 29414678
    386 5oy0:f (2.501) BS01 CLA ? GO:0009522 ... P29256 29414678
    387 5oy0:f (2.501) BS02 CLA ? GO:0009522 ... P29256 29414678
    388 5oy0:f (2.501) BS03 CLA ? GO:0009522 ... P29256 29414678
    389 5oy0:f (2.501) BS04 CLA ? GO:0009522 ... P29256 29414678
    390 5oy0:f (2.501) BS05 CLA ? GO:0009522 ... P29256 29414678
    391 5oy0:f (2.501) BS06 CLA ? GO:0009522 ... P29256 29414678
    392 5oy0:f (2.501) BS07 ZEX ? GO:0009522 ... P29256 29414678
    393 5oy0:h (2.501) BS01 CLA ? GO:0009522 ... Q55330 29414678
    394 5oy0:h (2.501) BS02 CLA ? GO:0009522 ... Q55330 29414678
    395 5oy0:h (2.501) BS03 CLA ? GO:0009522 ... Q55330 29414678
    396 5oy0:h (2.501) BS04 CLA ? GO:0009522 ... Q55330 29414678
    397 5oy0:i (2.501) BS01 CLA ? GO:0009522 ... Q55330 29414678
    398 5oy0:i (2.501) BS02 CLA ? GO:0009522 ... Q55330 29414678
    399 5oy0:i (2.501) BS03 CLA ? GO:0009522 ... Q55330 29414678
    400 5oy0:i (2.501) BS04 CLA ? GO:0009522 ... Q55330 29414678

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417