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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8t:A (8.1) BS01 rna ? GO:0002181 ... P0CX45 23142985
    2 4v8t:B (8.1) BS01 rna ? GO:0000027 ... P14126 23142985
    3 4v8t:C (8.1) BS01 rna ? GO:0002181 ... P10664 23142985
    4 4v8t:C (8.1) BS02 rna ? GO:0002181 ... P10664 23142985
    5 4v8t:D (8.1) BS01 rna ? GO:0000027 ... P26321 23142985
    6 4v8t:D (8.1) BS02 rna ? GO:0000027 ... P26321 23142985
    7 4v8t:E (8.1) BS01 rna ? GO:0000027 ... Q02326 23142985
    8 4v8t:F (8.1) BS01 rna ? GO:0000463 ... P05737 23142985
    9 4v8t:F (8.1) BS02 rna ? GO:0000463 ... P05737 23142985
    10 4v8t:G (8.1) BS01 rna ? GO:0000470 ... P17076 23142985
    11 4v8t:G (8.1) BS02 rna ? GO:0000470 ... P17076 23142985
    12 4v8t:H (8.1) BS01 rna ? GO:0002181 ... P05738 23142985
    13 4v8t:I (8.1) BS01 rna ? GO:0000027 ... P41805 23142985
    14 4v8t:I (8.1) BS02 rna ? GO:0000027 ... P41805 23142985
    15 4v8t:J (8.1) BS01 rna ? GO:0000027 ... P0C0W9 23142985
    16 4v8t:J (8.1) BS02 rna ? GO:0000027 ... P0C0W9 23142985
    17 4v8t:K (8.1) BS01 rna N/A N/A N/A 23142985
    18 4v8t:L (8.1) BS01 rna ? GO:0002181 ... Q12690 23142985
    19 4v8t:L (8.1) BS02 rna ? GO:0002181 ... Q12690 23142985
    20 4v8t:M (8.1) BS01 rna ? GO:0000027 ... P36105 23142985
    21 4v8t:N (8.1) BS01 rna ? GO:0002181 ... P05748 23142985
    22 4v8t:N (8.1) BS02 rna ? GO:0002181 ... P05748 23142985
    23 4v8t:O (8.1) BS01 rna ? GO:0000470 ... P26784 23142985
    24 4v8t:P (8.1) BS01 rna ? GO:0000448 ... P05740 23142985
    25 4v8t:P (8.1) BS02 rna ? GO:0000448 ... P05740 23142985
    26 4v8t:Q (8.1) BS01 rna ? GO:0002181 ... P0CX49 23142985
    27 4v8t:R (8.1) BS01 rna ? GO:0002181 ... P0CX82 23142985
    28 4v8t:S (8.1) BS01 rna ? GO:0002181 ... P0CX23 23142985
    29 4v8t:S (8.1) BS02 rna ? GO:0002181 ... P0CX23 23142985
    30 4v8t:T (8.1) BS01 rna ? GO:0002181 ... Q02753 23142985
    31 4v8t:T (8.1) BS02 rna ? GO:0002181 ... Q02753 23142985
    32 4v8t:U (8.1) BS01 rna ? GO:0002181 ... P05749 23142985
    33 4v8t:V (8.1) BS01 rna ? GO:0002181 ... P0CX41 23142985
    34 4v8t:W (8.1) BS01 rna ? GO:0002181 ... P04449 23142985
    35 4v8t:X (8.1) BS01 rna ? GO:0000027 ... P04456 23142985
    36 4v8t:X (8.1) BS02 rna ? GO:0000027 ... P04456 23142985
    37 4v8t:Y (8.1) BS01 rna ? GO:0002181 ... P05743 23142985
    38 4v8t:Y (8.1) BS02 rna ? GO:0002181 ... P05743 23142985
    39 4v8t:Z (8.1) BS01 rna ? GO:0002181 ... P0C2H6 23142985
    40 4v8t:a (8.1) BS01 rna ? GO:0002181 ... P02406 23142985
    41 4v8t:b (8.1) BS01 rna ? GO:0002181 ... P05747 23142985
    42 4v8t:c (8.1) BS01 rna ? GO:0002181 ... P14120 23142985
    43 4v8t:d (8.1) BS01 rna ? GO:0002181 ... P0C2H8 23142985
    44 4v8t:e (8.1) BS01 rna ? GO:0002181 ... P38061 23142985
    45 4v8t:f (8.1) BS01 rna ? GO:0000027 ... P05744 23142985
    46 4v8t:g (8.1) BS01 rna ? GO:0002181 ... P87262 23142985
    47 4v8t:h (8.1) BS01 rna ? GO:0000463 ... P0CX84 23142985
    48 4v8t:h (8.1) BS02 rna ? GO:0000463 ... P0CX84 23142985
    49 4v8t:i (8.1) BS01 rna ? GO:0002181 ... P05745 23142985
    50 4v8t:j (8.1) BS01 rna ? GO:0000448 ... P49166 23142985
    51 4v8t:j (8.1) BS02 rna ? GO:0000448 ... P49166 23142985
    52 4v8t:j (8.1) BS03 ZN ? GO:0000448 ... P49166 23142985
    53 4v8t:k (8.1) BS01 rna ? GO:0002181 ... P49167 23142985
    54 4v8t:l (8.1) BS01 rna ? GO:0002181 ... P04650 23142985
    55 4v8t:l (8.1) BS02 rna ? GO:0002181 ... P04650 23142985
    56 4v8t:m (8.1) BS01 rna ? GO:0000027 ... P0CH08 23142985
    57 4v8t:m (8.1) BS02 ZN ? GO:0000027 ... P0CH08 23142985
    58 4v8t:o (8.1) BS01 rna ? GO:0002181 ... P0CX27 23142985
    59 4v8t:o (8.1) BS02 ZN ? GO:0002181 ... P0CX27 23142985
    60 4v8t:p (8.1) BS01 rna ? GO:0002181 ... P0CX25 23142985
    61 4v8t:p (8.1) BS02 ZN ? GO:0002181 ... P0CX25 23142985
    62 4v8t:q (8.1) BS01 rna ? GO:0000027 ... P05317 23142985
    63 4v8t:t (8.1) BS01 rna 3.-.-.- GO:0000055 ... Q03862 23142985
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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