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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8r:AA (3.8) BS01 ADP ? GO:0005515 ... P12612 23478063
    2 4v8r:AA (3.8) BS02 BEF ? GO:0005515 ... P12612 23478063
    3 4v8r:AB (3.8) BS01 ADP ? GO:0005515 ... P39076 23478063
    4 4v8r:AB (3.8) BS02 BEF ? GO:0005515 ... P39076 23478063
    5 4v8r:AB (3.8) BS03 MG ? GO:0005515 ... P39076 23478063
    6 4v8r:AD (3.8) BS01 ADP ? GO:0005524 ... P39078 23478063
    7 4v8r:AD (3.8) BS02 BEF ? GO:0005524 ... P39078 23478063
    8 4v8r:AE (3.8) BS01 ADP ? GO:0005524 ... P40413 23478063
    9 4v8r:AE (3.8) BS02 BEF ? GO:0005524 ... P40413 23478063
    10 4v8r:AG (3.8) BS01 ADP ? GO:0005524 ... P39077 23478063
    11 4v8r:AG (3.8) BS02 BEF ? GO:0005524 ... P39077 23478063
    12 4v8r:AH (3.8) BS01 ADP ? GO:0005524 ... P42943 23478063
    13 4v8r:AH (3.8) BS02 BEF ? GO:0005524 ... P42943 23478063
    14 4v8r:AQ (3.8) BS01 ADP ? GO:0005524 ... P47079 23478063
    15 4v8r:AQ (3.8) BS02 BEF ? GO:0005524 ... P47079 23478063
    16 4v8r:AZ (3.8) BS01 ADP ? GO:0005524 ... P39079 23478063
    17 4v8r:AZ (3.8) BS02 BEF ? GO:0005524 ... P39079 23478063
    18 4v8r:Aa (3.8) BS01 ADP ? GO:0005515 ... P12612 23478063
    19 4v8r:Aa (3.8) BS02 BEF ? GO:0005515 ... P12612 23478063
    20 4v8r:Ab (3.8) BS01 ADP ? GO:0005515 ... P39076 23478063
    21 4v8r:Ab (3.8) BS02 BEF ? GO:0005515 ... P39076 23478063
    22 4v8r:Ab (3.8) BS03 MG ? GO:0005515 ... P39076 23478063
    23 4v8r:Ad (3.8) BS01 ADP ? GO:0005524 ... P39078 23478063
    24 4v8r:Ad (3.8) BS02 BEF ? GO:0005524 ... P39078 23478063
    25 4v8r:Ae (3.8) BS01 ADP ? GO:0005524 ... P40413 23478063
    26 4v8r:Ae (3.8) BS02 BEF ? GO:0005524 ... P40413 23478063
    27 4v8r:Ag (3.8) BS01 ADP ? GO:0005524 ... P39077 23478063
    28 4v8r:Ag (3.8) BS02 BEF ? GO:0005524 ... P39077 23478063
    29 4v8r:Ah (3.8) BS01 ADP ? GO:0005524 ... P42943 23478063
    30 4v8r:Ah (3.8) BS02 BEF ? GO:0005524 ... P42943 23478063
    31 4v8r:Aq (3.8) BS01 ADP ? GO:0005524 ... P47079 23478063
    32 4v8r:Aq (3.8) BS02 BEF ? GO:0005524 ... P47079 23478063
    33 4v8r:Az (3.8) BS01 ADP ? GO:0005524 ... P39079 23478063
    34 4v8r:Az (3.8) BS02 BEF ? GO:0005524 ... P39079 23478063
    35 4v8r:BA (3.8) BS01 ADP ? GO:0005515 ... P12612 23478063
    36 4v8r:BA (3.8) BS02 BEF ? GO:0005515 ... P12612 23478063
    37 4v8r:BB (3.8) BS01 ADP ? GO:0005515 ... P39076 23478063
    38 4v8r:BB (3.8) BS02 BEF ? GO:0005515 ... P39076 23478063
    39 4v8r:BB (3.8) BS03 MG ? GO:0005515 ... P39076 23478063
    40 4v8r:BD (3.8) BS01 ADP ? GO:0005524 ... P39078 23478063
    41 4v8r:BD (3.8) BS02 BEF ? GO:0005524 ... P39078 23478063
    42 4v8r:BE (3.8) BS01 ADP ? GO:0005524 ... P40413 23478063
    43 4v8r:BE (3.8) BS02 BEF ? GO:0005524 ... P40413 23478063
    44 4v8r:BG (3.8) BS01 ADP ? GO:0005524 ... P39077 23478063
    45 4v8r:BG (3.8) BS02 BEF ? GO:0005524 ... P39077 23478063
    46 4v8r:BH (3.8) BS01 ADP ? GO:0005524 ... P42943 23478063
    47 4v8r:BH (3.8) BS02 BEF ? GO:0005524 ... P42943 23478063
    48 4v8r:BQ (3.8) BS01 ADP ? GO:0005524 ... P47079 23478063
    49 4v8r:BQ (3.8) BS02 BEF ? GO:0005524 ... P47079 23478063
    50 4v8r:BZ (3.8) BS01 ADP ? GO:0005524 ... P39079 23478063
    51 4v8r:BZ (3.8) BS02 BEF ? GO:0005524 ... P39079 23478063
    52 4v8r:Ba (3.8) BS01 ADP ? GO:0005515 ... P12612 23478063
    53 4v8r:Ba (3.8) BS02 BEF ? GO:0005515 ... P12612 23478063
    54 4v8r:Bb (3.8) BS01 ADP ? GO:0005515 ... P39076 23478063
    55 4v8r:Bb (3.8) BS02 BEF ? GO:0005515 ... P39076 23478063
    56 4v8r:Bb (3.8) BS03 MG ? GO:0005515 ... P39076 23478063
    57 4v8r:Bd (3.8) BS01 ADP ? GO:0005524 ... P39078 23478063
    58 4v8r:Bd (3.8) BS02 BEF ? GO:0005524 ... P39078 23478063
    59 4v8r:Be (3.8) BS01 ADP ? GO:0005524 ... P40413 23478063
    60 4v8r:Be (3.8) BS02 BEF ? GO:0005524 ... P40413 23478063
    61 4v8r:Bg (3.8) BS01 ADP ? GO:0005524 ... P39077 23478063
    62 4v8r:Bg (3.8) BS02 BEF ? GO:0005524 ... P39077 23478063
    63 4v8r:Bh (3.8) BS01 ADP ? GO:0005524 ... P42943 23478063
    64 4v8r:Bh (3.8) BS02 BEF ? GO:0005524 ... P42943 23478063
    65 4v8r:Bq (3.8) BS01 ADP ? GO:0005524 ... P47079 23478063
    66 4v8r:Bq (3.8) BS02 BEF ? GO:0005524 ... P47079 23478063
    67 4v8r:Bz (3.8) BS01 ADP ? GO:0005524 ... P39079 23478063
    68 4v8r:Bz (3.8) BS02 BEF ? GO:0005524 ... P39079 23478063
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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