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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5h:AB (5.8) BS01 rna ? GO:0000028 ... P0A7V0 19933110
    2 4v5h:AC (5.8) BS01 rna ? GO:0003676 ... P0A7V3 19933110
    3 4v5h:AD (5.8) BS01 rna ? GO:0000028 ... P0A7V8 19933110
    4 4v5h:AE (5.8) BS01 rna ? GO:0000028 ... P0A7W1 19933110
    5 4v5h:AF (5.8) BS01 rna ? GO:0003735 ... P02358 19933110
    6 4v5h:AG (5.8) BS01 rna ? GO:0003723 ... P02359 19933110
    7 4v5h:AG (5.8) BS02 rna ? GO:0003723 ... P02359 19933110
    8 4v5h:AH (5.8) BS01 rna ? GO:0000028 ... P0A7W7 19933110
    9 4v5h:AI (5.8) BS01 rna ? GO:0000049 ... P0A7X3 19933110
    10 4v5h:AJ (5.8) BS01 rna ? GO:0000049 ... P0A7R5 19933110
    11 4v5h:AK (5.8) BS01 rna ? GO:0002181 ... P0A7R9 19933110
    12 4v5h:AL (5.8) BS01 rna ? GO:0000049 ... P0A7S3 19933110
    13 4v5h:AM (5.8) BS01 rna ? GO:0000049 ... P0A7S9 19933110
    14 4v5h:AM (5.8) BS02 rna ? GO:0000049 ... P0A7S9 19933110
    15 4v5h:AN (5.8) BS01 rna ? GO:0000028 ... P0AG59 19933110
    16 4v5h:AO (5.8) BS01 rna ? GO:0003735 ... Q8X9M2 19933110
    17 4v5h:AO (5.8) BS02 rna ? GO:0003735 ... Q8X9M2 19933110
    18 4v5h:AP (5.8) BS01 rna ? GO:0000028 ... P0A7T3 19933110
    19 4v5h:AQ (5.8) BS01 rna ? GO:0000028 ... P0AG63 19933110
    20 4v5h:AR (5.8) BS01 rna ? GO:0003735 ... P0A7T7 19933110
    21 4v5h:AS (5.8) BS01 rna ? GO:0003723 ... P0A7U3 19933110
    22 4v5h:AT (5.8) BS01 rna ? GO:0000028 ... P0A7U7 19933110
    23 4v5h:AU (5.8) BS01 rna ? GO:0003735 ... P68679 19933110
    24 4v5h:B0 (5.8) BS01 rna ? GO:0000027 ... P0A7M2 19933110
    25 4v5h:B1 (5.8) BS01 rna ? GO:0000027 ... P0A7M6 19933110
    26 4v5h:B2 (5.8) BS01 rna ? GO:0000027 ... P0AG51 19933110
    27 4v5h:B2 (5.8) BS02 rna ? GO:0000027 ... P0AG51 19933110
    28 4v5h:B3 (5.8) BS01 rna ? GO:0000027 ... P0A7N4 19933110
    29 4v5h:B4 (5.8) BS01 rna ? GO:0000027 ... P0A7N9 19933110
    30 4v5h:B5 (5.8) BS01 rna ? GO:0000027 ... P0A7L0 19933110
    31 4v5h:B6 (5.8) BS01 rna ? GO:0002181 ... P0A7P5 19933110
    32 4v5h:B7 (5.8) BS01 rna ? GO:0002181 ... P0A7Q1 19933110
    33 4v5h:B8 (5.8) BS01 rna ? GO:0002181 ... P0A7Q6 19933110
    34 4v5h:BC (5.8) BS01 rna ? GO:0000027 ... P60422 19933110
    35 4v5h:BD (5.8) BS01 rna ? GO:0000027 ... P60438 19933110
    36 4v5h:BE (5.8) BS01 rna ? GO:0001070 ... P60723 19933110
    37 4v5h:BF (5.8) BS01 rna ? GO:0000027 ... P62399 19933110
    38 4v5h:BF (5.8) BS02 rna ? GO:0000027 ... P62399 19933110
    39 4v5h:BF (5.8) BS03 rna ? GO:0000027 ... P62399 19933110
    40 4v5h:BG (5.8) BS01 rna ? GO:0000027 ... P0AG55 19933110
    41 4v5h:BH (5.8) BS01 rna ? GO:0002181 ... P0A7R1 19933110
    42 4v5h:BI (5.8) BS01 rna ? GO:0000027 ... P0A7J7 19933110
    43 4v5h:BJ (5.8) BS01 rna ? GO:0002181 ... P0AA10 19933110
    44 4v5h:BK (5.8) BS01 rna ? GO:0002181 ... P0ADY3 19933110
    45 4v5h:BK (5.8) BS02 rna ? GO:0002181 ... P0ADY3 19933110
    46 4v5h:BL (5.8) BS01 rna ? GO:0002181 ... P02413 19933110
    47 4v5h:BM (5.8) BS01 rna ? GO:0000027 ... P0ADY7 19933110
    48 4v5h:BM (5.8) BS02 rna ? GO:0000027 ... P0ADY7 19933110
    49 4v5h:BN (5.8) BS01 rna ? GO:0000027 ... P0AG44 19933110
    50 4v5h:BO (5.8) BS01 rna ? GO:0002181 ... P0C018 19933110
    51 4v5h:BO (5.8) BS02 rna ? GO:0002181 ... P0C018 19933110
    52 4v5h:BP (5.8) BS01 rna ? GO:0000027 ... P0A7K6 19933110
    53 4v5h:BP (5.8) BS02 rna ? GO:0000027 ... P0A7K6 19933110
    54 4v5h:BQ (5.8) BS01 rna ? GO:0000027 ... P0A7L3 19933110
    55 4v5h:BR (5.8) BS01 rna ? GO:0002181 ... P0AG48 19933110
    56 4v5h:BS (5.8) BS01 rna ? GO:0002181 ... P61175 19933110
    57 4v5h:BT (5.8) BS01 rna ? GO:0000027 ... P0ADZ0 19933110
    58 4v5h:BU (5.8) BS01 rna ? GO:0000027 ... P60624 19933110
    59 4v5h:BW (5.8) BS01 rna ? GO:0000027 ... P68919 19933110
    60 4v5h:BY (5.8) BS01 rna ? GO:0000027 ... P0A7L8 19933110
    61 4v5h:BY (5.8) BS02 rna ? GO:0000027 ... P0A7L8 19933110
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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