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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v4m:0 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    2 4v4m:1 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    3 4v4m:2 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    4 4v4m:3 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    5 4v4m:4 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    6 4v4m:5 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    7 4v4m:6 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    8 4v4m:7 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    9 4v4m:A (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    10 4v4m:B (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    11 4v4m:C (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    12 4v4m:D (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    13 4v4m:E (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    14 4v4m:F (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    15 4v4m:G (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    16 4v4m:H (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    17 4v4m:I (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    18 4v4m:J (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    19 4v4m:K (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    20 4v4m:L (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    21 4v4m:M (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    22 4v4m:N (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    23 4v4m:O (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    24 4v4m:P (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    25 4v4m:Q (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    26 4v4m:R (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    27 4v4m:S (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    28 4v4m:T (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    29 4v4m:U (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    30 4v4m:V (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    31 4v4m:W (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    32 4v4m:X (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    33 4v4m:Y (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    34 4v4m:Z (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    35 4v4m:a (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    36 4v4m:b (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    37 4v4m:c (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    38 4v4m:d (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    39 4v4m:e (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    40 4v4m:f (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    41 4v4m:g (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    42 4v4m:h (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    43 4v4m:i (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    44 4v4m:j (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    45 4v4m:k (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    46 4v4m:l (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    47 4v4m:m (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    48 4v4m:n (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    49 4v4m:o (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    50 4v4m:p (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    51 4v4m:q (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    52 4v4m:r (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    53 4v4m:s (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    54 4v4m:t (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    55 4v4m:u (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    56 4v4m:v (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    57 4v4m:w (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    58 4v4m:x (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    59 4v4m:y (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    60 4v4m:z (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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