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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    31801 1mh5:H (2.1) BS01 HAL ? N/A P01863 12948492 MOAD: Kd=0.61nM
    31802 1mh5:L (2.1) BS01 HAL ? GO:0005576 ... P01837 12948492
    31803 1mh9:A (1.8) BS01 PO4 3.1.3.- GO:0008253 ... Q9NPB1 12352955
    31804 1mh9:A (1.8) BS02 MG 3.1.3.- GO:0008253 ... Q9NPB1 12352955
    31805 1mhc:A (2.1) BS01 peptide ? N/A Q31093 7664344
    31806 1mhc:D (2.1) BS01 peptide ? N/A Q31093 7664344
    31807 1mhd:A (2.8) BS01 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    31808 1mhd:A (2.8) BS02 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    31809 1mhd:B (2.8) BS01 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    31810 1mhd:B (2.8) BS02 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    31811 1mhe:A (2.85) BS01 peptide ? N/A P13747 9660937
    31812 1mhe:C (2.85) BS01 peptide ? N/A P13747 9660937
    31813 1mhe:C (2.85) BS02 peptide ? N/A P13747 9660937
    31814 1mhi:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 1433291
    31815 1mhl:A (2.25) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    31816 1mhl:B (2.25) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    31817 1mhl:C (2.25) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 7840679
    31818 1mhl:C (2.25) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 7840679
    31819 1mhl:C (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    31820 1mhl:C (2.25) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    31821 1mhl:D (2.25) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 7840679
    31822 1mhl:D (2.25) BS02 FUC 1.11.2.2 GO:0004601 ... P05164 7840679
    31823 1mhl:D (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    31824 1mhl:D (2.25) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    31825 1mho:A (2.0) BS01 CA ? GO:0005509 ... P02638 9519413
    31826 1mho:A (2.0) BS02 CA ? GO:0005509 ... P02638 9519413
    31827 1mhp:A (2.8) BS01 MN ? N/A P18614 12662928
    31828 1mhp:B (2.8) BS01 MN ? N/A P18614 12662928
    31829 1mht:A (2.6) BS01 dna 2.1.1.37 GO:0003677 ... P05102 8293469
    31830 1mht:A (2.6) BS02 dna 2.1.1.37 GO:0003677 ... P05102 8293469
    31831 1mht:A (2.6) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 8293469
    31832 1mhw:A (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    31833 1mhw:A (1.9) BS02 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    31834 1mhw:A (1.9) BS03 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    31835 1mhw:B (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    31836 1mhw:B (1.9) BS02 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    31837 1mhw:B (1.9) BS03 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    31838 1mhw:C (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    31839 1mhw:D (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    31840 1mhy:D (2.0) BS01 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    31841 1mhy:D (2.0) BS02 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    31842 1mhz:D (2.7) BS01 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    31843 1mhz:D (2.7) BS02 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    31844 1mi3:A (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    31845 1mi3:B (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    31846 1mi3:C (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    31847 1mi3:D (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    31848 1mi4:A (1.7) BS01 S3P 2.5.1.19 GO:0003824 ... P0A6D3 12430021 BindingDB: Kd=7000nM
    31849 1mi5:A (2.5) BS01 peptide ? N/A P01889 12530975
    31850 1mi5:E (2.5) BS01 peptide ? N/A P01850 12530975
    31851 1mid:A (1.71) BS01 LAP ? GO:0006869 ... P07597 N/A
    31852 1mid:A (1.71) BS02 LAP ? GO:0006869 ... P07597 N/A
    31853 1mid:A (1.71) BS03 LAP ? GO:0006869 ... P07597 N/A
    31854 1mih:A (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    31855 1mih:A (2.7) BS02 BEF ? GO:0000156 ... P0AE67 12591865
    31856 1mih:B (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    31857 1mih:B (2.7) BS02 BEF ? GO:0000156 ... P0AE67 12591865
    31858 1mik:A (1.76) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 7650689
    31859 1mio:A (3.0) BS01 CFM 1.18.6.1 GO:0005524 ... P00467 8393705
    31860 1mio:A (3.0) BS02 CLP 1.18.6.1 GO:0005524 ... P00467 8393705
    31861 1mio:B (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    31862 1mio:B (3.0) BS02 CLP 1.18.6.1 GO:0005524 ... P11347 8393705
    31863 1mio:B (3.0) BS03 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    31864 1mio:C (3.0) BS01 CFM 1.18.6.1 GO:0005524 ... P00467 8393705
    31865 1mio:C (3.0) BS02 CLP 1.18.6.1 GO:0005524 ... P00467 8393705
    31866 1mio:D (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    31867 1mio:D (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    31868 1mio:D (3.0) BS03 CLP 1.18.6.1 GO:0005524 ... P11347 8393705
    31869 1miw:A (3.0) BS01 ATP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    31870 1miw:B (3.0) BS01 ATP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    31871 1miy:A (3.52) BS01 MG 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    31872 1miy:A (3.52) BS02 CTP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    31873 1miy:B (3.52) BS01 CTP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    31874 1mj1:A (13.0) BS01 rna ? GO:0003746 ... Q01698 12379845
    31875 1mj1:O (13.0) BS01 rna ? GO:0000049 ... Q5SHN3 12379845
    31876 1mj2:A (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31877 1mj2:A (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31878 1mj2:A (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31879 1mj2:A (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31880 1mj2:B (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31881 1mj2:B (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31882 1mj2:B (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31883 1mj2:B (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31884 1mj2:B (2.4) BS05 CA ? GO:0003677 ... P0A8U6 10986458
    31885 1mj2:C (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31886 1mj2:C (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31887 1mj2:C (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31888 1mj2:C (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31889 1mj2:D (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31890 1mj2:D (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31891 1mj2:D (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31892 1mj2:D (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31893 1mj3:A (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    31894 1mj3:B (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    31895 1mj3:B (2.1) BS02 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    31896 1mj3:C (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    31897 1mj3:C (2.1) BS02 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    31898 1mj3:E (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    31899 1mj3:F (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    31900 1mj3:F (2.1) BS02 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    31901 1mj4:A (1.2) BS01 HEM 1.8.3.1 GO:0020037 ... P51687 12832761
    31902 1mj7:H (2.25) BS01 HAL N/A N/A N/A 12948492 MOAD: Kd=4.5nM
    PDBbind: -logKd/Ki=8.35, Kd=4.50nM
    31903 1mj7:L (2.25) BS01 HAL N/A N/A N/A 12948492 PDBbind: -logKd/Ki=8.35, Kd=4.50nM
    31904 1mj9:A (2.5) BS01 COA 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q08649 12368900
    31905 1mja:A (2.26) BS01 COA 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q08649 12368900
    31906 1mjb:A (2.5) BS01 ACO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q08649 12368900
    31907 1mje:A (3.5) BS01 dna ? GO:0000724 ... P97929 12228710
    31908 1mjg:A (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    31909 1mjg:A (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    31910 1mjg:A (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    31911 1mjg:B (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    31912 1mjg:B (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    31913 1mjg:B (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    31914 1mjg:C (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    31915 1mjg:C (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    31916 1mjg:C (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    31917 1mjg:D (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    31918 1mjg:D (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    31919 1mjg:D (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    31920 1mjg:M (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    31921 1mjg:M (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    31922 1mjg:N (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    31923 1mjg:N (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    31924 1mjg:O (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    31925 1mjg:O (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    31926 1mjg:P (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    31927 1mjg:P (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    31928 1mjh:A (1.7) BS01 ATP ? GO:0005524 ... Q57997 9860944
    31929 1mjh:B (1.7) BS01 ATP ? GO:0005524 ... Q57997 9860944
    31930 1mji:A (2.5) BS01 rna ? GO:0000049 ... P41201 12515387
    31931 1mji:A (2.5) BS02 rna ? GO:0000049 ... P41201 12515387
    31932 1mji:A (2.5) BS03 MG ? GO:0000049 ... P41201 12515387
    31933 1mji:B (2.5) BS01 rna ? GO:0000049 ... P41201 12515387
    31934 1mji:B (2.5) BS02 rna ? GO:0000049 ... P41201 12515387
    31935 1mji:B (2.5) BS03 MG ? GO:0000049 ... P41201 12515387
    31936 1mjj:A (2.1) BS01 HAL N/A N/A N/A 12948492 MOAD: Kd=1.83nM
    PDBbind: -logKd/Ki=8.74, Kd=1.83nM
    31937 1mjj:B (2.1) BS01 HAL N/A N/A N/A 12948492 PDBbind: -logKd/Ki=8.74, Kd=1.83nM
    31938 1mjj:H (2.1) BS01 HAL N/A N/A N/A 12948492 MOAD: Kd=1.83nM
    31939 1mjj:L (2.1) BS01 HAL N/A N/A N/A 12948492
    31940 1mjl:A (2.1) BS01 SAM ? GO:0003677 ... P0A8U6 N/A
    31941 1mjl:A (2.1) BS02 SAM ? GO:0003677 ... P0A8U6 N/A
    31942 1mjl:B (2.1) BS01 SAM ? GO:0003677 ... P0A8U6 N/A
    31943 1mjl:B (2.1) BS02 SAM ? GO:0003677 ... P0A8U6 N/A
    31944 1mjm:A (2.2) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31945 1mjm:A (2.2) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31946 1mjm:B (2.2) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31947 1mjm:B (2.2) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31948 1mjn:A (1.3) BS01 MG ? N/A P20701 12526797
    31949 1mjo:A (2.1) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31950 1mjo:A (2.1) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31951 1mjo:A (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31952 1mjo:A (2.1) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31953 1mjo:B (2.1) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31954 1mjo:B (2.1) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31955 1mjo:B (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31956 1mjo:B (2.1) BS04 CA ? GO:0003677 ... P0A8U6 10986458
    31957 1mjo:B (2.1) BS05 SAM ? GO:0003677 ... P0A8U6 10986458
    31958 1mjo:C (2.1) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31959 1mjo:C (2.1) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31960 1mjo:C (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31961 1mjo:C (2.1) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31962 1mjo:D (2.1) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31963 1mjo:D (2.1) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31964 1mjo:D (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31965 1mjo:D (2.1) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31966 1mjp:A (3.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31967 1mjp:B (3.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31968 1mjp:B (3.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31969 1mjq:A (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31970 1mjq:A (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31971 1mjq:A (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31972 1mjq:A (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31973 1mjq:B (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31974 1mjq:B (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31975 1mjq:B (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31976 1mjq:C (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31977 1mjq:C (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31978 1mjq:C (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31979 1mjq:C (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31980 1mjq:D (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31981 1mjq:D (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31982 1mjq:D (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31983 1mjq:G (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31984 1mjq:G (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31985 1mjq:G (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31986 1mjq:G (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31987 1mjq:H (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31988 1mjq:H (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31989 1mjq:H (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31990 1mjq:H (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31991 1mjq:I (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31992 1mjq:I (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31993 1mjq:I (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31994 1mjq:I (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31995 1mjq:J (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    31996 1mjq:J (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    31997 1mjq:J (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    31998 1mjq:J (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    31999 1mjt:A (2.4) BS01 GLC 1.14.14.47 GO:0004517 ... P0A004 12467576
    32000 1mjt:A (2.4) BS02 FRU 1.14.14.47 GO:0004517 ... P0A004 12467576
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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