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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25401 1k4t:A (2.1) BS02 dna 5.6.2.1 GO:0003677 ... P11387 12426403
    25402 1k4t:A (2.1) BS03 dna 5.6.2.1 GO:0003677 ... P11387 12426403
    25403 1k4t:A (2.1) BS04 TTG 5.6.2.1 GO:0003677 ... P11387 12426403
    25404 1k4v:A (1.53) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11592969
    25405 1k4v:A (1.53) BS02 UDP 2.4.1.87 GO:0005975 ... P14769 11592969
    25406 1k4v:B (1.53) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11592969
    25407 1k4v:B (1.53) BS02 UDP 2.4.1.87 GO:0005975 ... P14769 11592969
    25408 1k4w:A (1.9) BS01 peptide ? GO:0003677 ... P45446 11689423
    25409 1k4y:A (2.5) BS01 4PN 3.1.1.1 GO:0005783 ... P12337 11967565
    25410 1k51:A (1.8) BS01 ZN ? N/A Q51912 11709166
    25411 1k51:A (1.8) BS02 ZN ? N/A Q51912 11709166
    25412 1k52:A (1.8) BS01 ZN ? N/A Q51912 11709166
    25413 1k52:A (1.8) BS02 ZN ? N/A Q51912 11709166
    25414 1k52:B (1.8) BS01 ZN ? N/A Q51912 11709166
    25415 1k53:A (2.1) BS01 ZN ? N/A Q51912 11709166
    25416 1k53:A (2.1) BS02 ZN ? N/A Q51912 11709166
    25417 1k53:B (2.1) BS01 ZN ? N/A Q51912 11709166
    25418 1k54:A (1.7) BS01 HOQ 3.5.2.6 GO:0008658 ... P14489 11724923
    25419 1k54:B (1.7) BS01 HOQ 3.5.2.6 GO:0008658 ... P14489 11724923
    25420 1k5d:A (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    25421 1k5d:A (2.7) BS02 GNP 3.6.5.- GO:0000054 ... P62826 11832950
    25422 1k5d:D (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    25423 1k5d:D (2.7) BS02 GNP 3.6.5.- GO:0000054 ... P62826 11832950
    25424 1k5d:G (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    25425 1k5d:G (2.7) BS02 GNP 3.6.5.- GO:0000054 ... P62826 11832950
    25426 1k5d:J (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    25427 1k5d:J (2.7) BS02 GNP 3.6.5.- GO:0000054 ... P62826 11832950
    25428 1k5g:A (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    25429 1k5g:A (3.1) BS02 GDP 3.6.5.- GO:0000054 ... P62826 11832950
    25430 1k5g:A (3.1) BS03 AF3 3.6.5.- GO:0000054 ... P62826 11832950
    25431 1k5g:D (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    25432 1k5g:D (3.1) BS02 GDP 3.6.5.- GO:0000054 ... P62826 11832950
    25433 1k5g:D (3.1) BS03 AF3 3.6.5.- GO:0000054 ... P62826 11832950
    25434 1k5g:G (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    25435 1k5g:G (3.1) BS02 GDP 3.6.5.- GO:0000054 ... P62826 11832950
    25436 1k5g:G (3.1) BS03 AF3 3.6.5.- GO:0000054 ... P62826 11832950
    25437 1k5g:J (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    25438 1k5g:J (3.1) BS02 GDP 3.6.5.- GO:0000054 ... P62826 11832950
    25439 1k5g:J (3.1) BS03 AF3 3.6.5.- GO:0000054 ... P62826 11832950
    25440 1k5n:A (1.09) BS01 peptide ? N/A P01889 12244049
    25441 1k5q:B (2.34) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    25442 1k5q:B (2.34) BS02 PAC 3.5.1.11 GO:0016787 ... P06875 15254299 MOAD: Ki=1.1mM
    25443 1k5r:A (-1.00) BS01 peptide ? N/A P46937 11687614
    25444 1k5s:B (2.43) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    25445 1k5s:B (2.43) BS02 GRO 3.5.1.11 GO:0016787 ... P06875 15254299 MOAD: Ki=0.124mM
    25446 1k5w:A (-1.00) BS01 CA ? GO:0016020 ... P21707 11754837
    25447 1k5w:A (-1.00) BS02 CA ? GO:0016020 ... P21707 11754837
    25448 1k61:A (2.1) BS01 dna ? GO:0003677 ... P0CY08 12466549
    25449 1k61:A (2.1) BS02 dna ? GO:0003677 ... P0CY08 12466549
    25450 1k61:B (2.1) BS01 dna ? GO:0003677 ... P0CY08 12466549
    25451 1k61:B (2.1) BS02 dna ? GO:0003677 ... P0CY08 12466549
    25452 1k61:C (2.1) BS01 dna ? GO:0003677 ... P0CY08 12466549
    25453 1k61:D (2.1) BS01 dna ? GO:0003677 ... P0CY08 12466549
    25454 1k61:D (2.1) BS02 dna ? GO:0003677 ... P0CY08 12466549
    25455 1k63:A (1.8) BS01 BRP 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    25456 1k68:A (1.9) BS01 MG ? GO:0000160 ... Q8RTN0 15240481
    25457 1k68:B (1.9) BS01 MG ? GO:0000160 ... Q8RTN0 15240481
    25458 1k6c:A (2.2) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 PDBbind: -logKd/Ki=7.48, Kd=33nM
    25459 1k6c:B (2.2) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 MOAD: Kd=33nM
    PDBbind: -logKd/Ki=7.48, Kd=33nM
    25460 1k6d:B (1.9) BS01 MG 2.8.3.8 GO:0005737 ... P76458 12454473
    25461 1k6e:A (1.85) BS01 1BP 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    25462 1k6e:A (1.85) BS02 1BP 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    25463 1k6l:L (3.1) BS01 BCL ? GO:0009772 ... P0C0Y8 11993994
    25464 1k6l:L (3.1) BS02 BCL ? GO:0009772 ... P0C0Y8 11993994
    25465 1k6l:L (3.1) BS03 BPH ? GO:0009772 ... P0C0Y8 11993994
    25466 1k6l:L (3.1) BS04 U10 ? GO:0009772 ... P0C0Y8 11993994
    25467 1k6l:L (3.1) BS05 FE ? GO:0009772 ... P0C0Y8 11993994
    25468 1k6l:L (3.1) BS06 BCL ? GO:0009772 ... P0C0Y8 11993994
    25469 1k6l:L (3.1) BS07 BPH ? GO:0009772 ... P0C0Y8 11993994
    25470 1k6l:M (3.1) BS01 BCL ? GO:0009772 ... P0C0Y9 11993994
    25471 1k6l:M (3.1) BS02 BPH ? GO:0009772 ... P0C0Y9 11993994
    25472 1k6l:M (3.1) BS03 FE ? GO:0009772 ... P0C0Y9 11993994
    25473 1k6l:M (3.1) BS04 BCL ? GO:0009772 ... P0C0Y9 11993994
    25474 1k6l:M (3.1) BS05 BCL ? GO:0009772 ... P0C0Y9 11993994
    25475 1k6l:M (3.1) BS06 BPH ? GO:0009772 ... P0C0Y9 11993994
    25476 1k6l:M (3.1) BS07 U10 ? GO:0009772 ... P0C0Y9 11993994
    25477 1k6l:M (3.1) BS08 SPN ? GO:0009772 ... P0C0Y9 11993994
    25478 1k6m:A (2.4) BS01 AGS 2.7.1.105
    3.1.3.46
    GO:0003824 ... P16118 12379646
    25479 1k6m:B (2.4) BS01 AGS 2.7.1.105
    3.1.3.46
    GO:0003824 ... P16118 12379646
    25480 1k6n:L (3.1) BS01 BCL ? GO:0009772 ... P0C0Y8 11993994
    25481 1k6n:L (3.1) BS02 BCL ? GO:0009772 ... P0C0Y8 11993994
    25482 1k6n:L (3.1) BS03 BPH ? GO:0009772 ... P0C0Y8 11993994
    25483 1k6n:L (3.1) BS04 U10 ? GO:0009772 ... P0C0Y8 11993994
    25484 1k6n:L (3.1) BS05 FE ? GO:0009772 ... P0C0Y8 11993994
    25485 1k6n:L (3.1) BS06 BCL ? GO:0009772 ... P0C0Y8 11993994
    25486 1k6n:L (3.1) BS07 BPH ? GO:0009772 ... P0C0Y8 11993994
    25487 1k6n:M (3.1) BS01 BCL ? GO:0009772 ... P0C0Y9 11993994
    25488 1k6n:M (3.1) BS02 BPH ? GO:0009772 ... P0C0Y9 11993994
    25489 1k6n:M (3.1) BS03 FE ? GO:0009772 ... P0C0Y9 11993994
    25490 1k6n:M (3.1) BS04 BCL ? GO:0009772 ... P0C0Y9 11993994
    25491 1k6n:M (3.1) BS05 BCL ? GO:0009772 ... P0C0Y9 11993994
    25492 1k6n:M (3.1) BS06 BPH ? GO:0009772 ... P0C0Y9 11993994
    25493 1k6n:M (3.1) BS07 U10 ? GO:0009772 ... P0C0Y9 11993994
    25494 1k6n:M (3.1) BS08 SPN ? GO:0009772 ... P0C0Y9 11993994
    25495 1k6o:A (3.19) BS01 dna ? GO:0003700 ... P28324 11846562
    25496 1k6o:A (3.19) BS02 dna ? GO:0003700 ... P28324 11846562
    25497 1k6o:B (3.19) BS01 dna ? GO:0000981 ... P11831 11846562
    25498 1k6o:B (3.19) BS02 dna ? GO:0000981 ... P11831 11846562
    25499 1k6o:C (3.19) BS01 dna ? GO:0000981 ... P11831 11846562
    25500 1k6o:C (3.19) BS02 dna ? GO:0000981 ... P11831 11846562
    25501 1k6p:A (2.2) BS01 XN3 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 PDBbind: -logKd/Ki=7.36, Kd=44nM
    25502 1k6p:B (2.2) BS01 XN3 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 MOAD: Kd=44nM
    PDBbind: -logKd/Ki=7.36, Kd=44nM
    25503 1k6r:A (2.3) BS01 MX1 3.5.2.6 GO:0008658 ... P14489 N/A
    25504 1k6r:B (2.3) BS01 MX1 3.5.2.6 GO:0008658 ... P14489 N/A
    25505 1k6s:A (2.03) BS01 CA 3.5.2.6 GO:0008658 ... P14489 N/A
    25506 1k6s:A (2.03) BS02 CA 3.5.2.6 GO:0008658 ... P14489 N/A
    25507 1k6s:A (2.03) BS03 IAP 3.5.2.6 GO:0008658 ... P14489 N/A
    25508 1k6s:B (2.03) BS01 CA 3.5.2.6 GO:0008658 ... P14489 N/A
    25509 1k6s:B (2.03) BS02 IAP 3.5.2.6 GO:0008658 ... P14489 N/A
    25510 1k6t:A (2.25) BS01 XN1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 PDBbind: -logKd/Ki=7.62, Kd=24nM
    25511 1k6t:B (2.25) BS01 XN1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 MOAD: Kd=24nM
    PDBbind: -logKd/Ki=7.62, Kd=24nM
    25512 1k6v:A (2.0) BS01 XN2 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 PDBbind: -logKd/Ki=6.92, Kd=120nM
    25513 1k6v:B (2.0) BS01 XN2 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 MOAD: Kd=120nM
    PDBbind: -logKd/Ki=6.92, Kd=120nM
    25514 1k6w:A (1.75) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    25515 1k6x:A (1.5) BS01 NAD ? GO:0001081 ... Q5AU62 11726498
    25516 1k6y:A (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    25517 1k6y:B (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    25518 1k6y:C (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    25519 1k6y:D (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    25520 1k70:A (1.8) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    25521 1k70:A (1.8) BS02 HPY 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    25522 1k72:A (1.8) BS01 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    25523 1k72:A (1.8) BS02 GLC 3.2.1.4 GO:0004553 ... P37700 12837787
    25524 1k72:A (1.8) BS03 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    25525 1k72:A (1.8) BS04 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    25526 1k72:B (1.8) BS01 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    25527 1k72:B (1.8) BS02 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    25528 1k73:1 (3.01) BS01 rna ? GO:0003735 ... P60619 12860128
    25529 1k73:2 (3.01) BS01 rna ? GO:0003723 ... P32410 12860128
    25530 1k73:3 (3.01) BS01 rna ? GO:0003735 ... P22452 12860128
    25531 1k73:4 (3.01) BS01 rna ? GO:0000049 ... P32411 12860128
    25532 1k73:4 (3.01) BS02 MG ? GO:0000049 ... P32411 12860128
    25533 1k73:C (3.01) BS01 rna ? GO:0002181 ... P20276 12860128
    25534 1k73:C (3.01) BS02 MG ? GO:0002181 ... P20276 12860128
    25535 1k73:D (3.01) BS01 rna ? GO:0003723 ... P20279 12860128
    25536 1k73:E (3.01) BS01 rna ? GO:0003723 ... P12735 12860128
    25537 1k73:F (3.01) BS01 rna ? GO:0000049 ... P14124 12860128
    25538 1k73:F (3.01) BS02 rna ? GO:0000049 ... P14124 12860128
    25539 1k73:G (3.01) BS01 rna ? GO:0002181 ... P14135 12860128
    25540 1k73:H (3.01) BS01 rna ? GO:0001682 ... P12743 12860128
    25541 1k73:J (3.01) BS01 rna ? GO:0000027 ... P60617 12860128
    25542 1k73:K (3.01) BS01 rna ? GO:0003729 ... P29198 12860128
    25543 1k73:L (3.01) BS01 rna ? GO:0003735 ... P22450 12860128
    25544 1k73:M (3.01) BS01 rna ? GO:0003735 ... P12737 12860128
    25545 1k73:N (3.01) BS01 rna ? GO:0002181 ... P60618 12860128
    25546 1k73:O (3.01) BS01 rna ? GO:0000027 ... P14123 12860128
    25547 1k73:O (3.01) BS02 rna ? GO:0000027 ... P14123 12860128
    25548 1k73:P (3.01) BS01 rna ? GO:0003723 ... P12733 12860128
    25549 1k73:Q (3.01) BS01 rna ? GO:0003723 ... P14119 12860128
    25550 1k73:R (3.01) BS01 rna ? GO:0003735 ... P12734 12860128
    25551 1k73:R (3.01) BS02 rna ? GO:0003735 ... P12734 12860128
    25552 1k73:S (3.01) BS01 rna ? GO:0002181 ... P10970 12860128
    25553 1k73:T (3.01) BS01 rna ? GO:0000027 ... P12732 12860128
    25554 1k73:U (3.01) BS01 rna ? GO:0002181 ... P10972 12860128
    25555 1k73:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    25556 1k73:V (3.01) BS01 rna ? GO:0003735 ... P14116 12860128
    25557 1k73:W (3.01) BS01 rna ? GO:0003735 ... P10971 12860128
    25558 1k73:X (3.01) BS01 rna ? GO:0000463 ... P14121 12860128
    25559 1k73:X (3.01) BS02 rna ? GO:0000463 ... P14121 12860128
    25560 1k73:Y (3.01) BS01 rna ? GO:0002181 ... P18138 12860128
    25561 1k73:Z (3.01) BS01 rna ? GO:0000166 ... P12736 12860128
    25562 1k73:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    25563 1k74:A (2.3) BS01 peptide ? GO:0003677 ... P19793 11698662
    25564 1k74:A (2.3) BS02 9CR ? GO:0003677 ... P19793 11698662 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    25565 1k74:D (2.3) BS01 peptide ? GO:0003677 ... P37231 11698662
    25566 1k74:D (2.3) BS02 544 ? GO:0003677 ... P37231 11698662 BindingDB: EC50=0.280000nM
    25567 1k77:A (1.63) BS01 MG 5.3.1.35 GO:0008903 ... Q46891 12112708
    25568 1k77:A (1.63) BS02 MG 5.3.1.35 GO:0008903 ... Q46891 12112708
    25569 1k78:A (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    25570 1k78:A (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    25571 1k78:B (2.25) BS01 dna ? GO:0003700 ... P27577 11779502
    25572 1k78:B (2.25) BS02 dna ? GO:0003700 ... P27577 11779502
    25573 1k78:E (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    25574 1k78:E (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    25575 1k78:F (2.25) BS01 dna ? GO:0003700 ... P27577 11779502
    25576 1k78:F (2.25) BS02 dna ? GO:0003700 ... P27577 11779502
    25577 1k78:I (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    25578 1k78:I (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    25579 1k79:A (2.4) BS01 dna ? GO:0003700 ... P27577 11779502
    25580 1k79:A (2.4) BS02 dna ? GO:0003700 ... P27577 11779502
    25581 1k79:D (2.4) BS01 dna ? GO:0003700 ... P27577 11779502
    25582 1k79:D (2.4) BS02 dna ? GO:0003700 ... P27577 11779502
    25583 1k7a:A (2.8) BS01 dna ? GO:0003700 ... P27577 11779502
    25584 1k7a:A (2.8) BS02 dna ? GO:0003700 ... P27577 11779502
    25585 1k7a:D (2.8) BS01 dna ? GO:0003700 ... P27577 11779502
    25586 1k7a:D (2.8) BS02 dna ? GO:0003700 ... P27577 11779502
    25587 1k7d:A (2.15) BS01 GRO 3.5.1.11 GO:0016787 ... P06875 15254299
    25588 1k7d:B (2.15) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    25589 1k7d:B (2.15) BS02 GRO 3.5.1.11 GO:0016787 ... P06875 15254299 MOAD: Ki=0.47mM
    25590 1k7e:A (2.3) BS01 IAG 4.2.1.20 GO:0000162 ... P00929 11756456
    25591 1k7e:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    25592 1k7f:A (1.9) BS01 IAV 4.2.1.20 GO:0000162 ... P00929 11756456
    25593 1k7f:B (1.9) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    25594 1k7g:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25595 1k7g:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25596 1k7g:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25597 1k7g:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25598 1k7g:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25599 1k7g:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25600 1k7g:A (2.0) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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