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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23601 1ji4:F (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23602 1ji4:F (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23603 1ji4:G (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23604 1ji4:G (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23605 1ji4:H (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23606 1ji4:H (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23607 1ji4:I (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23608 1ji4:I (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23609 1ji4:J (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23610 1ji4:J (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23611 1ji4:K (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23612 1ji4:K (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23613 1ji4:L (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23614 1ji4:L (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23615 1ji5:A (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    23616 1ji5:B (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    23617 1ji5:C (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    23618 1ji5:D (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    23619 1jia:A (2.13) BS01 CA 3.1.1.4 GO:0004623 ... O42187 9761847
    23620 1jia:B (2.13) BS01 CA 3.1.1.4 GO:0004623 ... O42187 9761847
    23621 1jib:A (3.3) BS01 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23622 1jib:A (3.3) BS02 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23623 1jib:A (3.3) BS03 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23624 1jib:B (3.3) BS01 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23625 1jib:B (3.3) BS02 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23626 1jib:B (3.3) BS03 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23627 1jib:B (3.3) BS04 GLC 3.2.1.135 GO:0004553 ... Q08751 11330677
    23628 1jid:A (1.8) BS01 rna ? GO:0006614 ... P09132 11641499
    23629 1jie:A (1.8) BS01 BLM ? GO:0046677 ... Q53793 11706014
    23630 1jie:A (1.8) BS02 BLM ? GO:0046677 ... Q53793 11706014
    23631 1jie:B (1.8) BS01 BLM ? GO:0046677 ... Q53793 11706014
    23632 1jie:B (1.8) BS02 BLM ? GO:0046677 ... Q53793 11706014
    23633 1jif:A (1.6) BS01 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    23634 1jif:A (1.6) BS02 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    23635 1jif:B (1.6) BS01 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    23636 1jif:B (1.6) BS02 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    23637 1jig:A (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23638 1jig:A (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23639 1jig:B (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23640 1jig:B (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23641 1jig:C (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23642 1jig:C (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23643 1jig:D (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23644 1jig:D (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    23645 1jii:A (3.2) BS01 383 6.1.1.1 GO:0000166 ... A6QHR2 11567092 PDBbind: -logKd/Ki=9.00, IC50=1nM
    23646 1jij:A (3.2) BS01 629 6.1.1.1 GO:0000166 ... A6QHR2 11567092 PDBbind: -logKd/Ki=8.52, IC50=3nM
    23647 1jik:A (2.8) BS01 545 6.1.1.1 GO:0000166 ... A6QHR2 11567092 PDBbind: -logKd/Ki=9.70, IC50=0.2nM
    23648 1jil:A (2.2) BS01 485 6.1.1.1 GO:0000166 ... A6QHR2 11567092 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    23649 1jim:A (2.31) BS01 ICU 3.4.21.36 GO:0004252 ... P00772 N/A
    23650 1jin:A (2.3) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    23651 1jin:A (2.3) BS02 KTN 1.14.15.35 GO:0004497 ... Q00441 11469860
    23652 1jio:A (2.1) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    23653 1jio:A (2.1) BS02 DEB 1.14.15.35 GO:0004497 ... Q00441 11469860
    23654 1jip:A (2.0) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    23655 1jip:A (2.0) BS02 KTN 1.14.15.35 GO:0004497 ... Q00441 11469860
    23656 1jir:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    23657 1jir:A (2.0) BS02 AML 3.4.21.4 GO:0004175 ... P00760 N/A
    23658 1jir:A (2.0) BS03 AML 3.4.21.4 GO:0004175 ... P00760 N/A
    23659 1jiu:A (2.5) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    23660 1jiv:A (2.07) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    23661 1jiw:P (1.74) BS01 ZN 3.4.24.40 GO:0001869 ... Q03023 11445573
    23662 1jiw:P (1.74) BS02 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23663 1jiw:P (1.74) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23664 1jiw:P (1.74) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23665 1jiw:P (1.74) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23666 1jiw:P (1.74) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23667 1jiw:P (1.74) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23668 1jiw:P (1.74) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23669 1jiw:P (1.74) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    23670 1jix:A (1.65) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    23671 1jiz:A (2.6) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    23672 1jiz:A (2.6) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    23673 1jiz:A (2.6) BS03 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23674 1jiz:A (2.6) BS04 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23675 1jiz:A (2.6) BS05 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23676 1jiz:A (2.6) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 11575929 PDBbind: -logKd/Ki=8.70, IC50=2.0nM
    23677 1jiz:B (2.6) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    23678 1jiz:B (2.6) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    23679 1jiz:B (2.6) BS03 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23680 1jiz:B (2.6) BS04 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23681 1jiz:B (2.6) BS05 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    23682 1jiz:B (2.6) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 11575929
    23683 1jj0:A (1.9) BS01 GLC 3.2.1.17 GO:0003796 ... P00698 11679726
    23684 1jj0:A (1.9) BS02 FRU 3.2.1.17 GO:0003796 ... P00698 11679726
    23685 1jj2:1 (2.4) BS01 rna ? GO:0003735 ... P22452 11483524
    23686 1jj2:2 (2.4) BS01 rna ? GO:0000049 ... P32411 11483524
    23687 1jj2:2 (2.4) BS02 MG ? GO:0000049 ... P32411 11483524
    23688 1jj2:A (2.4) BS01 rna ? GO:0002181 ... P20276 11483524
    23689 1jj2:A (2.4) BS02 MG ? GO:0002181 ... P20276 11483524
    23690 1jj2:B (2.4) BS01 rna ? GO:0003723 ... P20279 11483524
    23691 1jj2:C (2.4) BS01 rna ? GO:0003723 ... P12735 11483524
    23692 1jj2:D (2.4) BS01 rna ? GO:0000049 ... P14124 11483524
    23693 1jj2:D (2.4) BS02 rna ? GO:0000049 ... P14124 11483524
    23694 1jj2:E (2.4) BS01 rna ? GO:0002181 ... P14135 11483524
    23695 1jj2:F (2.4) BS01 rna ? GO:0001682 ... P12743 11483524
    23696 1jj2:H (2.4) BS01 rna ? GO:0000027 ... P60617 11483524
    23697 1jj2:I (2.4) BS01 rna ? GO:0003729 ... P29198 11483524
    23698 1jj2:J (2.4) BS01 rna ? GO:0003735 ... P22450 11483524
    23699 1jj2:K (2.4) BS01 rna ? GO:0003735 ... P12737 11483524
    23700 1jj2:L (2.4) BS01 rna ? GO:0002181 ... P60618 11483524
    23701 1jj2:M (2.4) BS01 rna ? GO:0000027 ... P14123 11483524
    23702 1jj2:M (2.4) BS02 rna ? GO:0000027 ... P14123 11483524
    23703 1jj2:N (2.4) BS01 rna ? GO:0003723 ... P12733 11483524
    23704 1jj2:O (2.4) BS01 rna ? GO:0003723 ... P14119 11483524
    23705 1jj2:P (2.4) BS01 rna ? GO:0003735 ... P12734 11483524
    23706 1jj2:P (2.4) BS02 rna ? GO:0003735 ... P12734 11483524
    23707 1jj2:Q (2.4) BS01 rna ? GO:0002181 ... P10970 11483524
    23708 1jj2:R (2.4) BS01 rna ? GO:0000027 ... P12732 11483524
    23709 1jj2:S (2.4) BS01 rna ? GO:0002181 ... P10972 11483524
    23710 1jj2:S (2.4) BS02 MG ? GO:0002181 ... P10972 11483524
    23711 1jj2:T (2.4) BS01 rna ? GO:0003735 ... P14116 11483524
    23712 1jj2:U (2.4) BS01 rna ? GO:0003735 ... P10971 11483524
    23713 1jj2:V (2.4) BS01 rna ? GO:0000463 ... P14121 11483524
    23714 1jj2:V (2.4) BS02 rna ? GO:0000463 ... P14121 11483524
    23715 1jj2:W (2.4) BS01 rna ? GO:0002181 ... P18138 11483524
    23716 1jj2:X (2.4) BS01 rna ? GO:0000166 ... P12736 11483524
    23717 1jj2:X (2.4) BS02 MG ? GO:0000166 ... P12736 11483524
    23718 1jj2:Y (2.4) BS01 rna ? GO:0003735 ... P60619 11483524
    23719 1jj2:Z (2.4) BS01 rna ? GO:0003723 ... P32410 11483524
    23720 1jj4:A (2.4) BS01 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    23721 1jj4:A (2.4) BS02 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    23722 1jj4:B (2.4) BS01 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    23723 1jj4:B (2.4) BS02 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    23724 1jj6:C (2.3) BS01 dna ? GO:0000150 ... P03013 11847127
    23725 1jj6:C (2.3) BS02 dna ? GO:0000150 ... P03013 11847127
    23726 1jj7:A (2.4) BS01 ADP 7.4.2.14 GO:0005524 ... Q03518 11532960
    23727 1jj8:C (2.75) BS01 dna ? GO:0000150 ... P03013 11847127
    23728 1jj8:C (2.75) BS02 dna ? GO:0000150 ... P03013 11847127
    23729 1jj9:A (2.0) BS01 CA 3.4.24.34 GO:0004222 ... P22894 11278347
    23730 1jj9:A (2.0) BS02 CA 3.4.24.34 GO:0004222 ... P22894 11278347
    23731 1jj9:A (2.0) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 11278347
    23732 1jj9:A (2.0) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 11278347
    23733 1jj9:A (2.0) BS05 BBT 3.4.24.34 GO:0004222 ... P22894 11278347 MOAD: ic50=1700nM
    PDBbind: -logKd/Ki=5.77, IC50=1.7uM
    BindingDB: IC50=1700nM
    23734 1jjb:A (2.3) BS01 PE7 3.1.1.7 GO:0001507 ... P04058 12095250
    23735 1jjc:A (2.6) BS01 FA5 6.1.1.20 GO:0000049 ... Q5SGX2 11679717
    23736 1jjc:B (2.6) BS01 SO4 6.1.1.20 GO:0000049 ... Q5SGX1 11679717
    23737 1jjd:A (-1.00) BS01 ZN ? GO:0046872 ... P30331 11493688
    23738 1jjd:A (-1.00) BS02 ZN ? GO:0046872 ... P30331 11493688
    23739 1jjd:A (-1.00) BS03 ZN ? GO:0046872 ... P30331 11493688
    23740 1jjd:A (-1.00) BS04 ZN ? GO:0046872 ... P30331 11493688
    23741 1jje:A (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23742 1jje:A (1.8) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23743 1jje:A (1.8) BS03 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23744 1jje:A (1.8) BS04 BYS 3.5.2.6 GO:0008270 ... Q79MP6 11390410 MOAD: ic50=0.0037uM
    PDBbind: -logKd/Ki=8.43, IC50=3.7nM
    23745 1jje:B (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23746 1jje:B (1.8) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23747 1jje:B (1.8) BS03 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23748 1jje:B (1.8) BS04 BYS 3.5.2.6 GO:0008270 ... Q79MP6 11390410 MOAD: ic50=0.0037uM
    23749 1jjk:A (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316 PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    23750 1jjk:A (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316 PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    23751 1jjk:B (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316 PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    23752 1jjk:B (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316 PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    23753 1jjk:C (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23754 1jjk:C (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23755 1jjk:D (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23756 1jjk:D (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23757 1jjk:E (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23758 1jjk:E (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23759 1jjk:F (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23760 1jjk:F (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23761 1jjk:G (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23762 1jjk:G (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23763 1jjk:H (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23764 1jjk:H (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23765 1jjk:I (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23766 1jjk:I (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23767 1jjk:J (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23768 1jjk:J (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23769 1jjk:K (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23770 1jjk:K (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23771 1jjk:L (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23772 1jjk:L (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23773 1jjk:M (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23774 1jjk:M (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23775 1jjk:N (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23776 1jjk:N (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23777 1jjk:O (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23778 1jjk:O (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23779 1jjk:P (3.0) BS01 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23780 1jjk:P (3.0) BS02 BMP 4.1.1.23 GO:0004590 ... P08244 11526316
    23781 1jjt:A (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23782 1jjt:A (1.8) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23783 1jjt:A (1.8) BS03 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23784 1jjt:A (1.8) BS04 BDS 3.5.2.6 GO:0008270 ... Q79MP6 11390410 MOAD: ic50=0.009uM
    PDBbind: -logKd/Ki=8.05, IC50=9nM
    23785 1jjt:B (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23786 1jjt:B (1.8) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23787 1jjt:B (1.8) BS03 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    23788 1jjt:B (1.8) BS04 BDS 3.5.2.6 GO:0008270 ... Q79MP6 11390410 MOAD: ic50=0.009uM
    23789 1jju:A (2.05) BS01 HEM ? GO:0009055 ... Q8VUT0 11717396
    23790 1jju:A (2.05) BS02 HEM ? GO:0009055 ... Q8VUT0 11717396
    23791 1jju:B (2.05) BS01 HEM ? N/A Q8VUS7 11717396
    23792 1jjv:A (2.0) BS01 ATP 2.7.1.24 GO:0004140 ... P44920 11886213
    23793 1jjw:A (1.9) BS01 K 3.4.25.2 GO:0004298 ... P43772 11717526
    23794 1jjw:B (1.9) BS01 K 3.4.25.2 GO:0004298 ... P43772 11717526
    23795 1jjw:C (1.9) BS01 K 3.4.25.2 GO:0004298 ... P43772 11717526
    23796 1jk0:A (2.8) BS01 ZN 1.17.4.1 GO:0004748 ... P09938 11526233
    23797 1jk1:A (1.9) BS01 dna ? N/A P08046 11800559 PDBbind: Kd=26pM
    23798 1jk1:A (1.9) BS02 dna ? N/A P08046 11800559 PDBbind: Kd=26pM
    23799 1jk1:A (1.9) BS03 ZN ? N/A P08046 11800559
    23800 1jk1:A (1.9) BS04 ZN ? N/A P08046 11800559

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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