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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23401 1jfh:A (2.03) BS06 CA 3.2.1.1 GO:0003824 ... P00690 9385631
    23402 1jfi:B (2.62) BS01 dna ? GO:0000122 ... Q01658 11461703
    23403 1jfi:B (2.62) BS02 dna ? GO:0000122 ... Q01658 11461703
    23404 1jfi:C (2.62) BS01 dna ? GO:0003677 ... P20226 11461703
    23405 1jfi:C (2.62) BS02 dna ? GO:0003677 ... P20226 11461703
    23406 1jfk:A (-1.00) BS01 CA ? GO:0001891 ... P38505 11724551
    23407 1jfk:A (-1.00) BS02 CA ? GO:0001891 ... P38505 11724551
    23408 1jfk:A (-1.00) BS03 CA ? GO:0001891 ... P38505 11724551
    23409 1jfk:A (-1.00) BS04 CA ? GO:0001891 ... P38505 11724551
    23410 1jfp:A (-1.00) BS01 RET ? GO:0000139 ... P02699 11570894
    23411 1jfs:A (2.9) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=2.2nM
    23412 1jfs:A (2.9) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    23413 1jft:A (2.5) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=0.7nM
    23414 1jft:A (2.5) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    23415 1jfz:A (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    23416 1jfz:B (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    23417 1jfz:C (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    23418 1jfz:D (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    23419 1jg0:A (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11590022
    23420 1jg0:A (2.0) BS02 DDT 2.1.1.45 GO:0000287 ... P0A884 11590022 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5.0uM
    BindingDB: IC50=5.0e+3nM, Ki=1.8e+3nM
    23421 1jg0:B (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11590022
    23422 1jg0:B (2.0) BS02 DDT 2.1.1.45 GO:0000287 ... P0A884 11590022 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5.0uM
    BindingDB: IC50=5.0e+3nM, Ki=1.8e+3nM
    23423 1jg1:A (1.2) BS01 SAH 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23424 1jg2:A (1.5) BS01 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23425 1jg3:A (2.1) BS01 peptide 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23426 1jg3:A (2.1) BS02 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23427 1jg3:B (2.1) BS01 peptide 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23428 1jg3:B (2.1) BS02 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23429 1jg4:A (1.5) BS01 SAM 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23430 1jg6:A (1.9) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    23431 1jg7:A (1.65) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    23432 1jg8:A (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23433 1jg8:B (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23434 1jg8:B (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23435 1jg8:C (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23436 1jg8:D (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23437 1jg8:D (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23438 1jg9:A (1.66) BS01 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    23439 1jg9:A (1.66) BS02 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    23440 1jgc:A (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    23441 1jgc:B (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    23442 1jgc:C (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    23443 1jgd:A (1.9) BS01 peptide ? N/A P01889 14555655
    23444 1jge:A (2.1) BS01 peptide ? N/A P01889 12244049
    23445 1jgg:A (2.0) BS01 dna ? GO:0000981 ... P06602 8557047
    23446 1jgg:A (2.0) BS02 dna ? GO:0000981 ... P06602 8557047
    23447 1jgg:B (2.0) BS01 dna ? GO:0000981 ... P06602 8557047
    23448 1jgg:B (2.0) BS02 dna ? GO:0000981 ... P06602 8557047
    23449 1jgi:A (2.0) BS01 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    23450 1jgi:A (2.0) BS02 FRU 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    23451 1jgj:A (2.4) BS01 RET ? GO:0005216 ... P42196 11452084
    23452 1jgl:H (2.15) BS01 EST N/A N/A N/A 11451948 PDBbind: -logKd/Ki=8.70, Kd=2nM
    23453 1jgl:L (2.15) BS01 EST ? N/A Q7TS98 11451948 MOAD: Kd=2nM
    PDBbind: -logKd/Ki=8.70, Kd=2nM
    23454 1jgm:A (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    23455 1jgm:A (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    23456 1jgm:A (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    23457 1jgm:B (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    23458 1jgm:B (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    23459 1jgm:B (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    23460 1jgn:A (-1.00) BS01 peptide ? GO:0003723 ... P11940 14685257
    23461 1jgo:J (5.6) BS01 rna ? GO:0000028 ... P17291 11511350
    23462 1jgp:J (7.0) BS01 rna ? GO:0000028 ... P17291 11511350
    23463 1jgq:J (5.0) BS01 rna ? GO:0000028 ... P17291 11511350
    23464 1jgt:A (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23465 1jgt:A (1.95) BS02 APC 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23466 1jgt:A (1.95) BS03 CMA 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23467 1jgt:B (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23468 1jgt:B (1.95) BS02 APC 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23469 1jgt:B (1.95) BS03 CMA 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23470 1jgu:H (1.8) BS01 HBC ? N/A Q91Z05 11724535
    23471 1jgu:L (1.8) BS01 HBC ? N/A Q52L64 11724535
    23472 1jgw:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    23473 1jgw:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    23474 1jgw:L (2.8) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    23475 1jgw:L (2.8) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    23476 1jgw:L (2.8) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    23477 1jgw:L (2.8) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    23478 1jgw:L (2.8) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    23479 1jgw:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    23480 1jgw:M (2.8) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    23481 1jgw:M (2.8) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    23482 1jgw:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    23483 1jgw:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    23484 1jgw:M (2.8) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    23485 1jgw:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    23486 1jgw:M (2.8) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    23487 1jgx:L (3.01) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    23488 1jgx:L (3.01) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    23489 1jgx:L (3.01) BS03 BCL ? GO:0009772 ... P0C0Y8 11526320
    23490 1jgx:L (3.01) BS04 BPH ? GO:0009772 ... P0C0Y8 11526320
    23491 1jgx:L (3.01) BS05 FE ? GO:0009772 ... P0C0Y8 11526320
    23492 1jgx:L (3.01) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    23493 1jgx:M (3.01) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    23494 1jgx:M (3.01) BS02 BCL ? GO:0009772 ... P0C0Y9 11526320
    23495 1jgx:M (3.01) BS03 BPH ? GO:0009772 ... P0C0Y9 11526320
    23496 1jgx:M (3.01) BS04 FE ? GO:0009772 ... P0C0Y9 11526320
    23497 1jgx:M (3.01) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    23498 1jgx:M (3.01) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    23499 1jgx:M (3.01) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    23500 1jgx:M (3.01) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    23501 1jgy:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    23502 1jgy:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    23503 1jgy:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    23504 1jgy:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    23505 1jgy:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    23506 1jgy:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    23507 1jgy:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    23508 1jgy:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    23509 1jgy:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    23510 1jgy:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    23511 1jgy:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    23512 1jgy:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    23513 1jgy:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    23514 1jgy:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    23515 1jgy:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    23516 1jgz:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    23517 1jgz:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    23518 1jgz:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    23519 1jgz:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    23520 1jgz:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    23521 1jgz:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    23522 1jgz:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    23523 1jgz:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    23524 1jgz:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    23525 1jgz:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    23526 1jgz:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    23527 1jgz:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    23528 1jgz:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    23529 1jgz:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    23530 1jgz:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    23531 1jh0:L (3.5) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    23532 1jh0:L (3.5) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    23533 1jh0:L (3.5) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    23534 1jh0:L (3.5) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    23535 1jh0:L (3.5) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    23536 1jh0:L (3.5) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    23537 1jh0:M (3.5) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    23538 1jh0:M (3.5) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    23539 1jh0:M (3.5) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    23540 1jh0:M (3.5) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    23541 1jh0:M (3.5) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    23542 1jh0:M (3.5) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    23543 1jh0:M (3.5) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    23544 1jh0:M (3.5) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    23545 1jh1:A (2.7) BS01 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    23546 1jh1:A (2.7) BS02 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    23547 1jh1:A (2.7) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    23548 1jh1:A (2.7) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    23549 1jh1:A (2.7) BS05 JST 3.4.24.34 GO:0004222 ... P22894 11563922 PDBbind: -logKd/Ki=4.39, Ki=41uM
    23550 1jh4:A (-1.00) BS01 peptide ? GO:0003723 ... P11940 14685257
    23551 1jh7:A (2.4) BS01 UVC 3.1.4.37 GO:0004112 ... O04147 11694509
    23552 1jh7:A (2.4) BS02 UVC 3.1.4.37 GO:0004112 ... O04147 11694509
    23553 1jh8:A (1.8) BS01 ADE 2.4.2.21 GO:0000166 ... Q05603 11441022
    23554 1jh9:A (2.55) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=2nM
    23555 1jh9:A (2.55) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    23556 1jha:A (2.0) BS01 AAM 2.4.2.21 GO:0000166 ... Q05603 11441022
    23557 1jha:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23558 1jhd:A (1.7) BS01 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    23559 1jhd:A (1.7) BS02 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    23560 1jhd:A (1.7) BS03 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    23561 1jhg:A (1.3) BS01 TRP ? GO:0003677 ... P0A881 8946848
    23562 1jhm:A (2.2) BS01 5MB 2.4.2.21 GO:0000166 ... Q05603 11441022
    23563 1jhn:A (2.9) BS01 CA ? GO:0005509 ... P24643 11583625
    23564 1jho:A (2.0) BS01 RMB 2.4.2.21 GO:0000166 ... Q05603 11441022
    23565 1jho:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23566 1jhp:A (2.2) BS01 5OB 2.4.2.21 GO:0000166 ... Q05603 11441022
    23567 1jhq:A (2.0) BS01 PMO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23568 1jhq:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23569 1jhr:A (2.0) BS01 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23570 1jhr:A (2.0) BS02 P2P 2.4.2.21 GO:0000166 ... Q05603 11441022
    23571 1jht:A (2.15) BS01 peptide ? N/A P04439 11544315
    23572 1jhu:A (2.0) BS01 PCR 2.4.2.21 GO:0000166 ... Q05603 11441022
    23573 1jhv:A (2.0) BS01 PCR 2.4.2.21 GO:0000166 ... Q05603 11441022
    23574 1jhv:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23575 1jhx:A (2.0) BS01 IPH 2.4.2.21 GO:0000166 ... Q05603 11441022
    23576 1jhy:A (2.0) BS01 IPH 2.4.2.21 GO:0000166 ... Q05603 11441022
    23577 1jhy:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23578 1ji0:A (2.0) BS01 ATP ? GO:0005524 ... Q9X0M3 N/A
    23579 1ji1:A (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23580 1ji1:A (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23581 1ji1:A (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23582 1ji1:B (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23583 1ji1:B (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23584 1ji1:B (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    23585 1ji2:A (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 12051850
    23586 1ji2:B (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 12051850
    23587 1ji3:A (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    23588 1ji3:A (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    23589 1ji3:B (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    23590 1ji3:B (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    23591 1ji4:A (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23592 1ji4:A (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23593 1ji4:B (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23594 1ji4:B (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23595 1ji4:C (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23596 1ji4:C (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23597 1ji4:D (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23598 1ji4:D (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23599 1ji4:E (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    23600 1ji4:E (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218