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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22601 1j3s:A (-1.00) BS01 HEC ? GO:0005515 ... P99999 N/A
    22602 1j3y:A (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    22603 1j3y:B (1.55) BS01 HNI ? GO:0004601 ... P68871 12773618
    22604 1j3y:C (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    22605 1j3y:D (1.55) BS01 HNI ? GO:0004601 ... P68871 12773618
    22606 1j3y:E (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    22607 1j3y:F (1.55) BS01 HNI ? GO:0004601 ... P68871 12773618
    22608 1j3y:G (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    22609 1j3y:H (1.55) BS01 HNI ? GO:0004601 ... P68871 12773618
    22610 1j3z:A (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    22611 1j3z:B (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    22612 1j3z:C (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    22613 1j3z:D (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    22614 1j3z:E (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    22615 1j3z:F (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    22616 1j3z:G (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    22617 1j3z:H (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    22618 1j40:A (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    22619 1j40:B (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    22620 1j40:C (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    22621 1j40:C (1.45) BS02 HNI ? GO:0004601 ... P69905 12773618
    22622 1j40:D (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    22623 1j40:E (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    22624 1j40:F (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    22625 1j40:G (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    22626 1j40:H (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    22627 1j41:A (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    22628 1j41:B (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    22629 1j41:C (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    22630 1j41:C (1.45) BS02 HNI ? GO:0004601 ... P69905 12773618
    22631 1j41:D (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    22632 1j41:E (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    22633 1j41:F (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    22634 1j41:G (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    22635 1j41:H (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    22636 1j46:A (-1.00) BS01 dna ? N/A Q05066 11563911
    22637 1j46:A (-1.00) BS02 dna ? N/A Q05066 11563911
    22638 1j47:A (-1.00) BS01 dna ? N/A Q05066 11563911
    22639 1j47:A (-1.00) BS02 dna ? N/A Q05066 11563911
    22640 1j49:A (2.2) BS01 NAD 1.1.1.28 GO:0008720 ... P26297 12054772
    22641 1j49:B (2.2) BS01 NAD 1.1.1.28 GO:0008720 ... P26297 12054772
    22642 1j4h:A (1.8) BS01 SUB 5.2.1.8 GO:0000413 ... P62942 14581219
    22643 1j4i:A (1.8) BS01 TST 5.2.1.8 GO:0000413 ... P62942 14581219
    22644 1j4j:A (2.55) BS01 ACO 2.3.1.- GO:0016746 ... P16966 12527305
    22645 1j4j:B (2.55) BS01 ACO 2.3.1.- GO:0016746 ... P16966 12527305
    22646 1j4k:A (-1.00) BS01 peptide 2.7.12.1 N/A P22216 11846568
    22647 1j4l:A (-1.00) BS01 peptide 2.7.12.1 N/A P22216 11846568
    22648 1j4p:A (-1.00) BS01 peptide 2.7.12.1 N/A P22216 11846567
    22649 1j4q:A (-1.00) BS01 peptide 2.7.12.1 N/A P22216 11846567
    22650 1j4r:A (1.8) BS01 001 5.2.1.8 GO:0000413 ... P62942 11735566 MOAD: Ki=0.019uM
    PDBbind: -logKd/Ki=7.72, Ki=0.019uM
    22651 1j4r:B (1.8) BS01 001 5.2.1.8 GO:0000413 ... P62942 11735566 MOAD: Ki=0.019uM
    22652 1j4r:D (1.8) BS01 001 5.2.1.8 GO:0000413 ... P62942 11735566 MOAD: Ki=0.019uM
    22653 1j4u:A (2.9) BS01 MMA ? GO:0030246 ... Q7M1T4 11902840
    22654 1j4u:B (2.9) BS01 MMA ? GO:0030246 ... Q7M1T4 11902840
    22655 1j4u:C (2.9) BS01 MMA ? GO:0030246 ... Q7M1T4 11902840
    22656 1j4u:D (2.9) BS01 MMA ? GO:0030246 ... Q7M1T4 11902840
    22657 1j4w:A (-1.00) BS01 dna ? GO:0003676 ... Q96AE4 11875576
    22658 1j4x:A (2.75) BS01 peptide 3.1.3.16
    3.1.3.48
    GO:0001772 ... P51452 11863439
    22659 1j51:A (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    22660 1j51:A (2.2) BS02 TCZ 1.14.15.1 GO:0004497 ... P00183 12114516
    22661 1j51:B (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    22662 1j51:B (2.2) BS02 TCZ 1.14.15.1 GO:0004497 ... P00183 12114516
    22663 1j51:C (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    22664 1j51:C (2.2) BS02 TCZ 1.14.15.1 GO:0004497 ... P00183 12114516
    22665 1j51:D (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    22666 1j52:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    22667 1j53:A (1.8) BS01 MN 2.7.7.7 GO:0003676 ... P03007 11937058
    22668 1j53:A (1.8) BS02 TMP 2.7.7.7 GO:0003676 ... P03007 11937058
    22669 1j53:A (1.8) BS03 TMP 2.7.7.7 GO:0003676 ... P03007 11937058
    22670 1j54:A (1.7) BS01 MN 2.7.7.7 GO:0003676 ... P03007 11937058
    22671 1j54:A (1.7) BS02 TMP 2.7.7.7 GO:0003676 ... P03007 11937058
    22672 1j55:A (2.0) BS01 CA ? GO:0000287 ... P25815 12507480
    22673 1j55:A (2.0) BS02 CA ? GO:0000287 ... P25815 12507480
    22674 1j56:A (-1.00) BS01 BEF ? GO:0000160 ... P41789 12885241
    22675 1j58:A (1.75) BS01 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    22676 1j58:A (1.75) BS02 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    22677 1j59:A (2.5) BS01 dna ? GO:0003677 ... P0ACJ8 8757802
    22678 1j59:A (2.5) BS02 dna ? GO:0003677 ... P0ACJ8 8757802
    22679 1j59:A (2.5) BS03 CMP ? GO:0003677 ... P0ACJ8 8757802
    22680 1j59:B (2.5) BS01 dna ? GO:0003677 ... P0ACJ8 8757802
    22681 1j59:B (2.5) BS02 dna ? GO:0003677 ... P0ACJ8 8757802
    22682 1j59:B (2.5) BS03 CMP ? GO:0003677 ... P0ACJ8 8757802
    22683 1j59:B (2.5) BS04 CMP ? GO:0003677 ... P0ACJ8 8757802
    22684 1j5a:K (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 11677599 PDBbind: Kd=10nM
    22685 1j5a:L (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599 PDBbind: Kd=10nM
    22686 1j5a:M (3.5) BS01 rna ? GO:0003735 ... P49228 11677599 PDBbind: Kd=10nM
    22687 1j5c:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11456890
    22688 1j5d:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11456890
    22689 1j5e:B (3.05) BS01 rna ? GO:0003735 ... P80371 11014182
    22690 1j5e:C (3.05) BS01 rna ? GO:0003676 ... P80372 11014182
    22691 1j5e:D (3.05) BS01 rna ? GO:0003723 ... P80373 11014182
    22692 1j5e:E (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 11014182
    22693 1j5e:F (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 11014182
    22694 1j5e:G (3.05) BS01 rna ? GO:0000028 ... P17291 11014182
    22695 1j5e:H (3.05) BS01 rna ? GO:0003735 ... P0DOY9 11014182
    22696 1j5e:I (3.05) BS01 rna ? GO:0000049 ... P80374 11014182
    22697 1j5e:J (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 11014182
    22698 1j5e:K (3.05) BS01 rna ? GO:0003735 ... P80376 11014182
    22699 1j5e:L (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 11014182
    22700 1j5e:M (3.05) BS01 rna ? GO:0000049 ... P80377 11014182
    22701 1j5e:N (3.05) BS01 rna ? GO:0003735 ... P0DOY6 11014182
    22702 1j5e:N (3.05) BS02 ZN ? GO:0003735 ... P0DOY6 11014182
    22703 1j5e:O (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 11014182
    22704 1j5e:P (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 11014182
    22705 1j5e:Q (3.05) BS01 rna ? GO:0003735 ... P0DOY7 11014182
    22706 1j5e:R (3.05) BS01 rna ? GO:0003735 ... Q5SLQ0 11014182
    22707 1j5e:S (3.05) BS01 rna ? GO:0000028 ... Q5SHP2 11014182
    22708 1j5e:T (3.05) BS01 rna ? GO:0003723 ... P80380 11014182
    22709 1j5i:A (-1.00) BS01 NCZ ? GO:0003677 ... P0A3R9 12269815 PDBbind: -logKd/Ki=3.64, Kd=230uM
    22710 1j5k:A (-1.00) BS01 dna ? GO:0003676 ... P61978 12093748 PDBbind: Kd=3uM
    22711 1j5n:A (-1.00) BS01 dna ? GO:0001195 ... P11632 12381320 PDBbind: Kd=7.5nM
    22712 1j5n:A (-1.00) BS02 dna ? GO:0001195 ... P11632 12381320 PDBbind: Kd=7.5nM
    22713 1j5o:A (3.5) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 10468556
    22714 1j5o:A (3.5) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 10468556
    22715 1j5p:A (1.9) BS01 NAD 1.4.1.21 GO:0009435 ... Q9X1X6 N/A
    22716 1j5u:A (2.0) BS01 CA ? GO:0008033 ... Q9X0H1 N/A
    22717 1j6t:A (-1.00) BS01 PO3 2.7.1.197 N/A P00550 12202490
    22718 1j6t:B (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 12202490
    22719 1j6v:A (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... Q9RRU8 11435117
    22720 1j6w:A (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 11435117
    22721 1j6w:A (2.1) BS02 MET 4.4.1.21 GO:0005506 ... P44007 11435117
    22722 1j6w:A (2.1) BS03 MET 4.4.1.21 GO:0005506 ... P44007 11435117
    22723 1j6w:B (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 11435117
    22724 1j6w:B (2.1) BS02 MET 4.4.1.21 GO:0005506 ... P44007 11435117
    22725 1j6x:A (2.38) BS01 ZN 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    22726 1j6x:A (2.38) BS02 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    22727 1j6x:A (2.38) BS03 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    22728 1j6x:B (2.38) BS01 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    22729 1j6x:B (2.38) BS02 ZN 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    22730 1j6x:B (2.38) BS03 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    22731 1j6z:A (1.54) BS01 CA 3.6.4.- GO:0000287 ... P68135 11474115
    22732 1j6z:A (1.54) BS02 CA 3.6.4.- GO:0000287 ... P68135 11474115
    22733 1j6z:A (1.54) BS03 CA 3.6.4.- GO:0000287 ... P68135 11474115
    22734 1j6z:A (1.54) BS04 ADP 3.6.4.- GO:0000287 ... P68135 11474115
    22735 1j6z:A (1.54) BS05 RHO 3.6.4.- GO:0000287 ... P68135 11474115
    22736 1j70:A (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    22737 1j70:B (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    22738 1j70:C (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    22739 1j71:A (1.8) BS01 peptide 3.4.23.24 GO:0004190 ... Q00663 9335526
    22740 1j73:B (2.0) BS01 peptide ? GO:0005179 ... P01308 11779231
    22741 1j73:D (2.0) BS01 peptide ? GO:0005179 ... P01308 11779231
    22742 1j75:A (1.85) BS01 dna ? GO:0003677 ... Q9QY24 11524677 PDBbind: Kd=35nM
    22743 1j77:A (1.5) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 11560504
    22744 1j78:B (2.31) BS01 VDY ? GO:0003779 ... P02774 11799400
    22745 1j79:A (1.7) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    22746 1j79:A (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    22747 1j79:A (1.7) BS03 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    22748 1j79:B (1.7) BS01 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    22749 1j79:B (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    22750 1j79:B (1.7) BS03 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    22751 1j79:B (1.7) BS04 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    22752 1j7a:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    22753 1j7b:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    22754 1j7c:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    22755 1j7e:A (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    22756 1j7e:B (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    22757 1j7j:A (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    22758 1j7j:B (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    22759 1j7k:A (1.8) BS01 ATP 3.6.4.12 GO:0000400 ... Q56313 11478862
    22760 1j7l:A (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22761 1j7l:A (2.2) BS02 ADP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22762 1j7l:B (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22763 1j7l:B (2.2) BS02 ADP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22764 1j7n:A (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    22765 1j7n:B (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    22766 1j7o:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    22767 1j7o:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    22768 1j7p:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    22769 1j7p:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    22770 1j7s:A (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    22771 1j7s:B (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    22772 1j7s:C (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    22773 1j7s:D (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    22774 1j7u:A (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22775 1j7u:A (2.4) BS02 ANP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22776 1j7u:B (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22777 1j7u:B (2.4) BS02 ANP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    22778 1j7w:A (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    22779 1j7w:B (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    22780 1j7w:C (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    22781 1j7w:D (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    22782 1j7y:A (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    22783 1j7y:B (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    22784 1j7y:C (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    22785 1j7y:D (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    22786 1j7z:B (2.25) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    22787 1j80:B (2.1) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    22788 1j81:B (2.2) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    22789 1j82:B (2.3) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    22790 1j83:A (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    22791 1j83:B (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    22792 1j84:A (2.02) BS01 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    22793 1j84:A (2.02) BS02 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    22794 1j84:A (2.02) BS03 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    22795 1j84:A (2.02) BS04 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    22796 1j84:A (2.02) BS05 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    22797 1j8a:A (1.21) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    22798 1j8e:A (1.85) BS01 CA ? N/A Q07954 11735395
    22799 1j8f:A (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894
    22800 1j8f:B (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218