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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2302 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 6kgx:lB (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2002 6kgx:lB (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    2003 6kgx:lE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2004 6kgx:lE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2005 6kgx:lE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2006 6kgx:lE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2007 6kgx:lF (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2008 6kgx:lF (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2009 6kgx:lF (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2010 6kgx:lG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2011 6kgx:lG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2012 6kgx:lG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2013 6kgx:lG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2014 6kgx:lI (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2015 6kgx:lI (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2016 6kgx:lI (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2017 6kgx:m1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2018 6kgx:m1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2019 6kgx:m2 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2020 6kgx:m2 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2021 6kgx:m2 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2022 6kgx:m4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2023 6kgx:m4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2024 6kgx:m4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2025 6kgx:m6 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2026 6kgx:m6 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2027 6kgx:m6 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2028 6kgx:m6 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2029 6kgx:m7 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2030 6kgx:m7 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2031 6kgx:m7 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2032 6kgx:m7 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2033 6kgx:m8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2034 6kgx:m8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2035 6kgx:m8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2036 6kgx:mA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2037 6kgx:mA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2038 6kgx:mA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2039 6kgx:mB (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2040 6kgx:mB (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2041 6kgx:mB (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2042 6kgx:mB (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2043 6kgx:mE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2044 6kgx:mE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2045 6kgx:mE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2046 6kgx:mF (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2047 6kgx:mF (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2048 6kgx:mF (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2049 6kgx:mF (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2050 6kgx:mG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2051 6kgx:mG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2052 6kgx:mG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2053 6kgx:mI (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2054 6kgx:mI (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2055 6kgx:mI (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2056 6kgx:n1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2057 6kgx:n1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2058 6kgx:n1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2059 6kgx:n4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2060 6kgx:n4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2061 6kgx:n4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2062 6kgx:nE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2063 6kgx:nE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2064 6kgx:nE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2065 6kgx:nE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2066 6kgx:nG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2067 6kgx:nG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2068 6kgx:nG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2069 6kgx:nG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2070 6kgx:o1 (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    2071 6kgx:o1 (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    2072 6kgx:o1 (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    2073 6kgx:o1 (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    2074 6kgx:o1 (2.8) BS05 PEB N/A GO:0015979 ... N/A 32076272
    2075 6kgx:o4 (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    2076 6kgx:o4 (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    2077 6kgx:o4 (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    2078 6kgx:o4 (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    2079 6kgx:o4 (2.8) BS05 PEB N/A GO:0015979 ... N/A 32076272
    2080 6kgx:oE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2081 6kgx:oE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2082 6kgx:oE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2083 6kgx:oE (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    2084 6kgx:oG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2085 6kgx:oG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2086 6kgx:oG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2087 6kgx:oG (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    2088 6kgx:p1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2089 6kgx:p1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2090 6kgx:p1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2091 6kgx:p1 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    2092 6kgx:p4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2093 6kgx:p4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2094 6kgx:p4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2095 6kgx:p4 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    2096 6kgx:p4 (2.8) BS05 PUB ? GO:0009507 ... E2IH77 32076272
    2097 6kgx:pE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2098 6kgx:pE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2099 6kgx:pE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2100 6kgx:pE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2101 6kgx:pG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2102 6kgx:pG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2103 6kgx:pG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2104 6kgx:pG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2105 6kgx:q1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2106 6kgx:q1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2107 6kgx:q1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2108 6kgx:q1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2109 6kgx:q1 (2.8) BS05 PEB ? GO:0009507 ... P11393 32076272
    2110 6kgx:q4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2111 6kgx:q4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2112 6kgx:q4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2113 6kgx:q4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2114 6kgx:q4 (2.8) BS05 PEB ? GO:0009507 ... P11393 32076272
    2115 6kgx:qE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2116 6kgx:qE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2117 6kgx:qE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2118 6kgx:qG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2119 6kgx:qG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2120 6kgx:qG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2121 6kgx:qG (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    2122 6kgx:r1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2123 6kgx:r1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2124 6kgx:r1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2125 6kgx:r1 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    2126 6kgx:r4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2127 6kgx:r4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2128 6kgx:r4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2129 6kgx:r4 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    2130 6kgx:rE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2131 6kgx:rE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2132 6kgx:rE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2133 6kgx:rE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2134 6kgx:rG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2135 6kgx:rG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2136 6kgx:rG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2137 6kgx:rG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2138 6kgx:s1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2139 6kgx:s1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2140 6kgx:s1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2141 6kgx:s1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2142 6kgx:s4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2143 6kgx:s4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2144 6kgx:s4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2145 6kgx:s4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2146 6kgx:sE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2147 6kgx:sE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2148 6kgx:sG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2149 6kgx:sG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2150 6kgx:sG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2151 6kgx:t1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2152 6kgx:t1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2153 6kgx:t4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2154 6kgx:t4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2155 6kgx:t4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2156 6kgx:t4 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    2157 6kgx:tE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2158 6kgx:tE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2159 6kgx:tE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2160 6kgx:tE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2161 6kgx:tG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2162 6kgx:tG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2163 6kgx:tG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2164 6kgx:tG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2165 6kgx:u1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2166 6kgx:u1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2167 6kgx:u1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2168 6kgx:u1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2169 6kgx:u4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2170 6kgx:u4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2171 6kgx:u4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2172 6kgx:u4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2173 6kgx:uE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2174 6kgx:uE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2175 6kgx:uE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2176 6kgx:uE (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    2177 6kgx:uG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2178 6kgx:uG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2179 6kgx:uG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2180 6kgx:uG (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    2181 6kgx:v1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2182 6kgx:v1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2183 6kgx:v1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2184 6kgx:v4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2185 6kgx:v4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2186 6kgx:v4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2187 6kgx:v4 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    2188 6kgx:vE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2189 6kgx:vE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2190 6kgx:vE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2191 6kgx:vE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2192 6kgx:vG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2193 6kgx:vG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2194 6kgx:vG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2195 6kgx:vG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2196 6kgx:w1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2197 6kgx:w1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2198 6kgx:w1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2199 6kgx:w1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2200 6kgx:w4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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