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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 1asz:A (3.0) BS01 rna 6.1.1.12 GO:0000166 ... P04802 8313877
    2002 1asz:A (3.0) BS02 ATP 6.1.1.12 GO:0000166 ... P04802 8313877
    2003 1asz:B (3.0) BS01 rna 6.1.1.12 GO:0000166 ... P04802 8313877
    2004 1asz:B (3.0) BS02 ATP 6.1.1.12 GO:0000166 ... P04802 8313877
    2005 1at1:A (2.8) BS01 MLI 2.1.3.2 GO:0004070 ... P0A786 2405902
    2006 1at1:A (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    2007 1at1:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2405902
    2008 1at1:C (2.8) BS01 MLI 2.1.3.2 GO:0004070 ... P0A786 2405902
    2009 1at1:C (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    2010 1at1:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2405902
    2011 1at3:A (2.5) BS01 DFP 3.4.21.97 GO:0004252 ... Q69527 9369473
    2012 1at3:B (2.5) BS01 DFP 3.4.21.97 GO:0004252 ... Q69527 9369473
    2013 1at9:A (2.8) BS01 RET ? GO:0005216 ... P02945 9296502
    2014 1atg:A (1.2) BS01 WO4 ? GO:0015689 ... Q7SIH2 9862806
    2015 1ati:B (2.75) BS01 peptide 6.1.1.14 GO:0000166 ... P56206 7556056
    2016 1atj:A (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2017 1atj:A (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2018 1atj:A (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    2019 1atj:B (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2020 1atj:B (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2021 1atj:B (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    2022 1atj:C (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2023 1atj:C (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2024 1atj:C (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    2025 1atj:D (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2026 1atj:D (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2027 1atj:D (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    2028 1atj:E (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2029 1atj:E (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2030 1atj:E (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    2031 1atj:F (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2032 1atj:F (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    2033 1atj:F (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    2034 1atk:A (2.2) BS01 E64 3.4.22.38 GO:0006508 ... P43235 9033588
    2035 1atl:A (1.8) BS01 ZN 3.4.24.42 GO:0004222 ... P15167 8078901
    2036 1atl:A (1.8) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8078901
    2037 1atl:A (1.8) BS03 0QI 3.4.24.42 GO:0004222 ... P15167 8078901 MOAD: Ki=0.52uM
    2038 1atl:B (1.8) BS01 ZN 3.4.24.42 GO:0004222 ... P15167 8078901
    2039 1atl:B (1.8) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8078901
    2040 1atl:B (1.8) BS03 0QI 3.4.24.42 GO:0004222 ... P15167 8078901 MOAD: Ki=0.52uM
    2041 1atn:A (2.8) BS01 ATP 3.6.4.- GO:0000287 ... P68135 2395459
    2042 1atn:D (2.8) BS01 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    2043 1atn:D (2.8) BS02 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    2044 1atn:D (2.8) BS03 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    2045 1atp:E (2.2) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 15299527
    2046 1atp:E (2.2) BS02 MN 2.7.11.11 GO:0000122 ... P05132 15299527
    2047 1atp:E (2.2) BS03 ATP 2.7.11.11 GO:0000122 ... P05132 15299527 MOAD: Kd=60nM
    2048 1atr:A (2.34) BS01 PO4 3.6.4.10 GO:0005524 ... P19120 8226982
    2049 1atr:A (2.34) BS02 ADP 3.6.4.10 GO:0005524 ... P19120 8226982 PDBbind: -logKd/Ki=6.96, Kd=110nM
    2050 1ats:A (2.43) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 8226982
    2051 1au0:A (2.6) BS01 SDK 3.4.22.38 GO:0006508 ... P43235 N/A PDBbind: -logKd/Ki=7.66, Ki=22nM
    BindingDB: Ki=22nM
    2052 1au1:A (2.2) BS01 BGC ? GO:0002250 ... P01574 9342320
    2053 1au1:B (2.2) BS01 ZN ? GO:0002250 ... P01574 9342320
    2054 1au2:A (2.6) BS01 POS 3.4.22.38 GO:0006508 ... P43235 N/A PDBbind: -logKd/Ki=7.89, Ki=13nM
    2055 1au3:A (2.5) BS01 PCM 3.4.22.38 GO:0006508 ... P43235 9733481
    2056 1au4:A (2.3) BS01 INP 3.4.22.38 GO:0006508 ... P43235 9733481
    2057 1au7:A (2.3) BS01 dna ? GO:0000981 ... P10037 9009203
    2058 1au7:A (2.3) BS02 dna ? GO:0000981 ... P10037 9009203
    2059 1au7:B (2.3) BS01 dna ? GO:0000981 ... P10037 9009203
    2060 1au7:B (2.3) BS02 dna ? GO:0000981 ... P10037 9009203
    2061 1au8:A (1.9) BS01 0H8 3.4.21.20 GO:0002003 ... P08311 N/A
    2062 1au9:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    2063 1au9:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    2064 1aud:A (-1.00) BS01 rna ? GO:0003676 ... P09012 9312034
    2065 1aui:A (2.1) BS01 ZN 3.1.3.16 GO:0000082 ... Q08209 8524402
    2066 1aui:A (2.1) BS02 FE 3.1.3.16 GO:0000082 ... Q08209 8524402
    2067 1aui:B (2.1) BS01 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    2068 1aui:B (2.1) BS02 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    2069 1aui:B (2.1) BS03 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    2070 1aui:B (2.1) BS04 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    2071 1auj:A (2.1) BS01 PPB 3.4.21.4 GO:0004175 ... P00760 9341205 PDBbind: -logKd/Ki=8.25, Ki=5.6nM
    2072 1auk:A (2.1) BS01 MG 3.1.6.8 GO:0004065 ... P15289 9521684
    2073 1aus:L (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    2074 1aus:M (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    2075 1aus:N (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    2076 1aus:O (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    2077 1aut:C (2.8) BS01 0G6 3.4.21.69 GO:0004252 ... P04070 9003757
    2078 1aux:A (2.3) BS01 CA ? GO:0005524 ... P17599 9463376
    2079 1aux:A (2.3) BS02 AGS ? GO:0005524 ... P17599 9463376
    2080 1aux:B (2.3) BS01 CA ? GO:0005524 ... P17599 9463376
    2081 1aux:B (2.3) BS02 AGS ? GO:0005524 ... P17599 9463376
    2082 1av4:A (2.2) BS01 CU 1.4.3.21 GO:0005507 ... P46881 9405045
    2083 1av5:B (2.0) BS01 AP2 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 9323207
    2084 1av6:A (2.8) BS01 rna 2.1.1.57 GO:0003746 ... P07617 9660928
    2085 1av6:A (2.8) BS02 MGT 2.1.1.57 GO:0003746 ... P07617 9660928
    2086 1av6:A (2.8) BS03 SAH 2.1.1.57 GO:0003746 ... P07617 9660928
    2087 1av8:A (2.8) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 9558317
    2088 1av8:B (2.8) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 9558317
    2089 1ava:A (1.9) BS01 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    2090 1ava:A (1.9) BS02 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    2091 1ava:A (1.9) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    2092 1ava:B (1.9) BS01 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    2093 1ava:B (1.9) BS02 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    2094 1ava:B (1.9) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    2095 1avc:A (2.9) BS01 CA ? GO:0001725 ... P79134 9748523
    2096 1avc:A (2.9) BS02 CA ? GO:0001725 ... P79134 9748523
    2097 1avc:A (2.9) BS03 CA ? GO:0001725 ... P79134 9748523
    2098 1avc:A (2.9) BS04 CA ? GO:0001725 ... P79134 9748523
    2099 1avc:A (2.9) BS05 CA ? GO:0001725 ... P79134 9748523
    2100 1avc:A (2.9) BS06 CA ? GO:0001725 ... P79134 9748523
    2101 1avd:A (2.7) BS01 BTN ? GO:0005576 ... P02701 8515446 PDBbind: -logKd/Ki=15.00, Kd=1fM
    2102 1avd:B (2.7) BS01 BTN ? GO:0005576 ... P02701 8515446
    2103 1avf:A (2.36) BS01 peptide 3.4.23.3 GO:0004190 ... P20142 9406551
    2104 1avf:J (2.36) BS01 peptide 3.4.23.3 GO:0004190 ... P20142 9406551
    2105 1avh:A (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    2106 1avh:A (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    2107 1avh:A (2.3) BS03 CA ? GO:0001786 ... P08758 1311770
    2108 1avh:B (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    2109 1avh:B (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    2110 1avl:A (2.8) BS01 CU 1.4.3.21 GO:0005507 ... P46881 9405045
    2111 1avm:A (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    2112 1avm:A (1.55) BS02 AZI 1.15.1.1 GO:0004784 ... P80293 N/A
    2113 1avm:B (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    2114 1avm:B (1.55) BS02 AZI 1.15.1.1 GO:0004784 ... P80293 N/A
    2115 1avn:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9265618
    2116 1avn:A (2.0) BS02 AZI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9265618 BindingDB: Ki=1500000nM
    2117 1avn:A (2.0) BS03 HSM 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9265618 MOAD: Kd=0.125mM
    PDBbind: -logKd/Ki=3.90, Kd=0.125mM
    2118 1avp:A (2.6) BS01 peptide 3.4.22.39 GO:0003677 ... P03252 8617222
    2119 1avr:A (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    2120 1avr:A (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    2121 1avr:A (2.3) BS03 CA ? GO:0001786 ... P08758 1311770
    2122 1avr:A (2.3) BS04 CA ? GO:0001786 ... P08758 1311770
    2123 1avr:A (2.3) BS05 CA ? GO:0001786 ... P08758 1311770
    2124 1avs:A (1.75) BS01 CA ? GO:0005509 ... P02588 9367759
    2125 1avs:A (1.75) BS02 CA ? GO:0005509 ... P02588 9367759
    2126 1avs:B (1.75) BS01 CA ? GO:0005509 ... P02588 9367759
    2127 1avs:B (1.75) BS02 CA ? GO:0005509 ... P02588 9367759
    2128 1avw:A (1.75) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9466914
    2129 1avx:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9466914
    2130 1aw1:A (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062 PDBbind: -logKd/Ki=1.05, Ki=89mM
    2131 1aw1:B (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062 PDBbind: -logKd/Ki=1.05, Ki=89mM
    2132 1aw1:D (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    2133 1aw1:E (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    2134 1aw1:G (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    2135 1aw1:H (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    2136 1aw1:J (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    2137 1aw1:K (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    2138 1aw3:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9425037
    2139 1aw5:A (2.3) BS01 ZN 4.2.1.24 GO:0004655 ... P05373 9406553
    2140 1aw6:A (-1.00) BS01 CD ? GO:0000981 ... P04386 9460244
    2141 1aw6:A (-1.00) BS02 CD ? GO:0000981 ... P04386 9460244
    2142 1aw8:B (2.2) BS01 peptide 4.1.1.11 GO:0004068 ... P0A790 9546220
    2143 1aw8:E (2.2) BS01 peptide 4.1.1.11 GO:0004068 ... P0A790 9546220
    2144 1aw8:E (2.2) BS02 peptide 4.1.1.11 GO:0004068 ... P0A790 9546220
    2145 1awb:A (2.5) BS01 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 N/A
    2146 1awb:A (2.5) BS02 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 N/A
    2147 1awb:A (2.5) BS03 IPD 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 N/A
    2148 1awb:B (2.5) BS01 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 N/A
    2149 1awb:B (2.5) BS02 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 N/A
    2150 1awb:B (2.5) BS03 IPD 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 N/A
    2151 1awc:A (2.15) BS01 dna ? GO:0003700 ... Q00422 9461436
    2152 1awc:A (2.15) BS02 dna ? GO:0003700 ... Q00422 9461436
    2153 1awd:A (1.4) BS01 FES ? GO:0009055 ... P56408 10545324
    2154 1awf:H (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9578548
    2155 1awf:H (2.2) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9578548
    2156 1awf:H (2.2) BS03 GR4 3.4.21.5 GO:0004252 ... P00734 9578548 PDBbind: -logKd/Ki=6.01, Ki=0.97uM
    2157 1awh:B (3.0) BS01 GR3 3.4.21.5 GO:0004252 ... P00734 9578548
    2158 1awh:D (3.0) BS01 GR3 3.4.21.5 GO:0004252 ... P00734 9578548 PDBbind: -logKd/Ki=6.08, Ki=0.83uM
    2159 1awi:A (2.2) BS01 peptide ? GO:0000774 ... P07737 9360613
    2160 1awi:B (2.2) BS01 peptide ? GO:0000774 ... P07737 9360613
    2161 1awp:A (2.0) BS01 HEM ? GO:0020037 ... P04166 9484218
    2162 1awp:B (2.0) BS01 HEM ? GO:0020037 ... P04166 9484218
    2163 1awq:A (1.58) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2164 1awr:A (1.58) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2165 1awr:B (1.58) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2166 1awr:C (1.58) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2167 1awr:D (1.58) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2168 1awr:E (1.58) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2169 1awr:F (1.58) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2170 1aws:A (2.55) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2171 1awt:A (2.55) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2172 1awt:B (2.55) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2173 1awt:C (2.55) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2174 1awt:D (2.55) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2175 1awt:E (2.55) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2176 1awt:F (2.55) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2177 1awu:A (2.34) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2178 1awv:A (2.34) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2179 1awv:B (2.34) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2180 1awv:C (2.34) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2181 1awv:D (2.34) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2182 1awv:E (2.34) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2183 1awv:F (2.34) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 9385632
    2184 1ax0:A (1.9) BS01 MN ? GO:0030246 ... P16404 9545381
    2185 1ax0:A (1.9) BS02 CA ? GO:0030246 ... P16404 9545381
    2186 1ax1:A (1.95) BS01 BGC ? GO:0030246 ... P16404 9545381
    2187 1ax1:A (1.95) BS02 GAL ? GO:0030246 ... P16404 9545381
    2188 1ax1:A (1.95) BS03 MN ? GO:0030246 ... P16404 9545381
    2189 1ax1:A (1.95) BS04 CA ? GO:0030246 ... P16404 9545381
    2190 1ax2:A (1.95) BS01 GAL ? GO:0030246 ... P16404 9545381
    2191 1ax2:A (1.95) BS02 MN ? GO:0030246 ... P16404 9545381
    2192 1ax2:A (1.95) BS03 CA ? GO:0030246 ... P16404 9545381
    2193 1ax9:A (2.8) BS01 EDR 3.1.1.7 GO:0001507 ... P04058 10089512
    2194 1axa:A (2.0) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 9521105
    2195 1axa:A (2.0) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 9521105
    2196 1axa:B (2.0) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 9521105
    2197 1axa:B (2.0) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 9521105
    2198 1axb:A (2.0) BS01 FOS 3.5.2.6 GO:0005515 ... P62593 9485412
    2199 1axc:A (2.6) BS01 peptide ? GO:0000122 ... P12004 8861913
    2200 1axc:C (2.6) BS01 peptide ? GO:0000122 ... P12004 8861913

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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