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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    20601 1iaq:C (2.9) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 11320243
    20602 1iau:A (2.0) BS01 peptide 3.4.21.79 GO:0001772 ... P10144 11325591
    20603 1iau:A (2.0) BS02 ZN 3.4.21.79 GO:0001772 ... P10144 11325591
    20604 1iau:A (2.0) BS03 ZN 3.4.21.79 GO:0001772 ... P10144 11325591
    20605 1iau:A (2.0) BS04 ZN 3.4.21.79 GO:0001772 ... P10144 11325591
    20606 1iau:A (2.0) BS05 ZN 3.4.21.79 GO:0001772 ... P10144 11325591
    20607 1iav:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    20608 1iav:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    20609 1iaw:A (2.4) BS01 dna 3.1.21.4 GO:0003677 ... P50187 11473254
    20610 1iaw:A (2.4) BS02 dna 3.1.21.4 GO:0003677 ... P50187 11473254
    20611 1iaw:A (2.4) BS03 dna 3.1.21.4 GO:0003677 ... P50187 11473254
    20612 1iaw:A (2.4) BS04 dna 3.1.21.4 GO:0003677 ... P50187 11473254
    20613 1iaw:B (2.4) BS01 dna 3.1.21.4 GO:0003677 ... P50187 11473254
    20614 1iaw:B (2.4) BS02 dna 3.1.21.4 GO:0003677 ... P50187 11473254
    20615 1iaw:B (2.4) BS03 dna 3.1.21.4 GO:0003677 ... P50187 11473254
    20616 1iaw:B (2.4) BS04 dna 3.1.21.4 GO:0003677 ... P50187 11473254
    20617 1iax:A (2.8) BS01 PLP 4.4.1.14 GO:0003824 ... P18485 11431475
    20618 1iax:B (2.8) BS01 PLP 4.4.1.14 GO:0003824 ... P18485 11431475
    20619 1iay:A (2.7) BS01 PLP 4.4.1.14 GO:0003824 ... P18485 11431475
    20620 1iay:A (2.7) BS02 AVG 4.4.1.14 GO:0003824 ... P18485 11431475
    20621 1ib0:A (2.3) BS01 FAD 1.6.2.2 GO:0016491 ... P20070 11695905
    20622 1ib0:A (2.3) BS02 NAD 1.6.2.2 GO:0016491 ... P20070 11695905
    20623 1ib1:E (2.7) BS01 COT 2.3.1.87 GO:0004059 ... Q29495 11336675
    20624 1ib1:F (2.7) BS01 COT 2.3.1.87 GO:0004059 ... Q29495 11336675
    20625 1ib1:G (2.7) BS01 COT 2.3.1.87 GO:0004059 ... Q29495 11336675
    20626 1ib1:H (2.7) BS01 COT 2.3.1.87 GO:0004059 ... Q29495 11336675
    20627 1ib4:A (2.0) BS01 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    20628 1ib4:A (2.0) BS02 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    20629 1ib4:A (2.0) BS03 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    20630 1ib4:A (2.0) BS04 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    20631 1ib4:B (2.0) BS01 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    20632 1ib4:B (2.0) BS02 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    20633 1ib4:B (2.0) BS03 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    20634 1ib4:B (2.0) BS04 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    20635 1ib4:B (2.0) BS05 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    20636 1ib5:A (2.45) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 11327787
    20637 1ib5:A (2.45) BS02 CU 1.15.1.1 GO:0004784 ... P00446 11327787
    20638 1ib6:A (2.1) BS01 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    20639 1ib6:A (2.1) BS02 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    20640 1ib6:A (2.1) BS03 NAD 1.1.1.37 GO:0003824 ... P61889 11389141
    20641 1ib6:C (2.1) BS01 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    20642 1ib6:C (2.1) BS02 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    20643 1ib6:C (2.1) BS03 NAD 1.1.1.37 GO:0003824 ... P61889 11389141
    20644 1ib6:D (2.1) BS01 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    20645 1ib6:D (2.1) BS02 SO4 1.1.1.37 GO:0003824 ... P61889 11389141
    20646 1ib6:D (2.1) BS03 NAD 1.1.1.37 GO:0003824 ... P61889 11389141
    20647 1ib7:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 N/A
    20648 1ibb:A (2.1) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 11327787
    20649 1ibb:A (2.1) BS02 CU 1.15.1.1 GO:0004784 ... P00446 11327787
    20650 1ibc:A (2.73) BS01 peptide 3.4.22.36 GO:0004197 ... P29466 9190289
    20651 1ibc:B (2.73) BS01 peptide 3.4.22.36 GO:0004197 ... P29466 9190289
    20652 1ibd:A (2.0) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 11327787
    20653 1ibd:A (2.0) BS02 CU 1.15.1.1 GO:0004784 ... P00446 11327787
    20654 1ibe:A (1.8) BS01 HEM ? GO:0004601 ... P01958 8980683
    20655 1ibe:B (1.8) BS01 HEM ? GO:0004601 ... P02062 8980683
    20656 1ibf:A (2.2) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 11327787
    20657 1ibf:A (2.2) BS02 CU 1.15.1.1 GO:0004784 ... P00446 11327787
    20658 1ibg:H (2.7) BS01 OBN N/A N/A N/A 7739045 PDBbind: -logKd/Ki=8.55, Ki=2.8nM
    20659 1ibg:L (2.7) BS01 OBN N/A N/A N/A 7739045 PDBbind: -logKd/Ki=8.55, Ki=2.8nM
    20660 1ibh:A (2.0) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 11327787
    20661 1ibh:A (2.0) BS02 CU 1.15.1.1 GO:0004784 ... P00446 11327787
    20662 1ibi:A (-1.00) BS01 ZN ? N/A Q05158 11583159
    20663 1ibi:A (-1.00) BS02 ZN ? N/A Q05158 11583159
    20664 1ibj:A (2.3) BS01 CO3 4.4.1.13 GO:0004121 ... P53780 11402193
    20665 1ibj:A (2.3) BS02 PLP 4.4.1.13 GO:0004121 ... P53780 11402193
    20666 1ibj:A (2.3) BS03 PLP 4.4.1.13 GO:0004121 ... P53780 11402193
    20667 1ibj:C (2.3) BS01 PLP 4.4.1.13 GO:0004121 ... P53780 11402193
    20668 1ibj:C (2.3) BS02 CO3 4.4.1.13 GO:0004121 ... P53780 11402193
    20669 1ibj:C (2.3) BS03 PLP 4.4.1.13 GO:0004121 ... P53780 11402193
    20670 1ibk:B (3.31) BS01 rna ? GO:0003735 ... P80371 11340196
    20671 1ibk:C (3.31) BS01 rna ? GO:0003676 ... P80372 11340196
    20672 1ibk:D (3.31) BS01 rna ? GO:0003723 ... P80373 11340196
    20673 1ibk:D (3.31) BS02 MG ? GO:0003723 ... P80373 11340196
    20674 1ibk:D (3.31) BS03 ZN ? GO:0003723 ... P80373 11340196
    20675 1ibk:E (3.31) BS01 rna ? GO:0003723 ... Q5SHQ5 11340196
    20676 1ibk:F (3.31) BS01 rna ? GO:0003735 ... Q5SLP8 11340196
    20677 1ibk:G (3.31) BS01 rna ? GO:0000028 ... P17291 11340196
    20678 1ibk:H (3.31) BS01 rna ? GO:0003735 ... P0DOY9 11340196
    20679 1ibk:I (3.31) BS01 rna ? GO:0000049 ... P80374 11340196
    20680 1ibk:J (3.31) BS01 rna ? GO:0000049 ... Q5SHN7 11340196
    20681 1ibk:K (3.31) BS01 rna ? GO:0003735 ... P80376 11340196
    20682 1ibk:L (3.31) BS01 rna ? GO:0000049 ... Q5SHN3 11340196
    20683 1ibk:M (3.31) BS01 rna ? GO:0000049 ... P80377 11340196
    20684 1ibk:N (3.31) BS01 rna ? GO:0003735 ... P0DOY6 11340196
    20685 1ibk:N (3.31) BS02 ZN ? GO:0003735 ... P0DOY6 11340196
    20686 1ibk:O (3.31) BS01 rna ? GO:0003735 ... Q5SJ76 11340196
    20687 1ibk:P (3.31) BS01 rna ? GO:0003735 ... Q5SJH3 11340196
    20688 1ibk:Q (3.31) BS01 rna ? GO:0003735 ... P0DOY7 11340196
    20689 1ibk:R (3.31) BS01 rna ? GO:0003735 ... Q5SLQ0 11340196
    20690 1ibk:S (3.31) BS01 rna ? GO:0000028 ... Q5SHP2 11340196
    20691 1ibk:T (3.31) BS01 rna ? GO:0003723 ... P80380 11340196
    20692 1ibl:B (3.11) BS01 rna ? GO:0003735 ... P80371 11340196
    20693 1ibl:C (3.11) BS01 rna ? GO:0003676 ... P80372 11340196
    20694 1ibl:D (3.11) BS01 rna ? GO:0003723 ... P80373 11340196
    20695 1ibl:D (3.11) BS02 MG ? GO:0003723 ... P80373 11340196
    20696 1ibl:D (3.11) BS03 ZN ? GO:0003723 ... P80373 11340196
    20697 1ibl:E (3.11) BS01 rna ? GO:0003723 ... Q5SHQ5 11340196
    20698 1ibl:F (3.11) BS01 rna ? GO:0003735 ... Q5SLP8 11340196
    20699 1ibl:G (3.11) BS01 rna ? GO:0000028 ... P17291 11340196
    20700 1ibl:H (3.11) BS01 rna ? GO:0003735 ... P0DOY9 11340196
    20701 1ibl:I (3.11) BS01 rna ? GO:0000049 ... P80374 11340196
    20702 1ibl:J (3.11) BS01 rna ? GO:0000049 ... Q5SHN7 11340196
    20703 1ibl:J (3.11) BS02 MG ? GO:0000049 ... Q5SHN7 11340196
    20704 1ibl:K (3.11) BS01 rna ? GO:0003735 ... P80376 11340196
    20705 1ibl:L (3.11) BS01 rna ? GO:0000049 ... Q5SHN3 11340196
    20706 1ibl:L (3.11) BS02 MG ? GO:0000049 ... Q5SHN3 11340196
    20707 1ibl:M (3.11) BS01 rna ? GO:0000049 ... P80377 11340196
    20708 1ibl:N (3.11) BS01 rna ? GO:0003735 ... P0DOY6 11340196
    20709 1ibl:N (3.11) BS02 ZN ? GO:0003735 ... P0DOY6 11340196
    20710 1ibl:O (3.11) BS01 rna ? GO:0003735 ... Q5SJ76 11340196
    20711 1ibl:P (3.11) BS01 rna ? GO:0003735 ... Q5SJH3 11340196
    20712 1ibl:Q (3.11) BS01 rna ? GO:0003735 ... P0DOY7 11340196
    20713 1ibl:R (3.11) BS01 rna ? GO:0003735 ... Q5SLQ0 11340196
    20714 1ibl:S (3.11) BS01 rna ? GO:0000028 ... Q5SHP2 11340196
    20715 1ibl:T (3.11) BS01 rna ? GO:0003723 ... P80380 11340196
    20716 1ibm:B (3.31) BS01 rna ? GO:0003735 ... P80371 11340196
    20717 1ibm:C (3.31) BS01 rna ? GO:0003676 ... P80372 11340196
    20718 1ibm:D (3.31) BS01 rna ? GO:0003723 ... P80373 11340196
    20719 1ibm:D (3.31) BS02 MG ? GO:0003723 ... P80373 11340196
    20720 1ibm:E (3.31) BS01 rna ? GO:0003723 ... Q5SHQ5 11340196
    20721 1ibm:F (3.31) BS01 rna ? GO:0003735 ... Q5SLP8 11340196
    20722 1ibm:G (3.31) BS01 rna ? GO:0000028 ... P17291 11340196
    20723 1ibm:H (3.31) BS01 rna ? GO:0003735 ... P0DOY9 11340196
    20724 1ibm:I (3.31) BS01 rna ? GO:0000049 ... P80374 11340196
    20725 1ibm:J (3.31) BS01 rna ? GO:0000049 ... Q5SHN7 11340196
    20726 1ibm:K (3.31) BS01 rna ? GO:0003735 ... P80376 11340196
    20727 1ibm:L (3.31) BS01 rna ? GO:0000049 ... Q5SHN3 11340196
    20728 1ibm:L (3.31) BS02 MG ? GO:0000049 ... Q5SHN3 11340196
    20729 1ibm:M (3.31) BS01 rna ? GO:0000049 ... P80377 11340196
    20730 1ibm:N (3.31) BS01 rna ? GO:0003735 ... P0DOY6 11340196
    20731 1ibm:N (3.31) BS02 ZN ? GO:0003735 ... P0DOY6 11340196
    20732 1ibm:O (3.31) BS01 rna ? GO:0003735 ... Q5SJ76 11340196
    20733 1ibm:P (3.31) BS01 rna ? GO:0003735 ... Q5SJH3 11340196
    20734 1ibm:Q (3.31) BS01 rna ? GO:0003735 ... P0DOY7 11340196
    20735 1ibm:R (3.31) BS01 rna ? GO:0003735 ... Q5SLQ0 11340196
    20736 1ibm:S (3.31) BS01 rna ? GO:0000028 ... Q5SHP2 11340196
    20737 1ibm:T (3.31) BS01 rna ? GO:0003723 ... P80380 11340196
    20738 1ibq:A (2.14) BS01 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    20739 1ibq:A (2.14) BS02 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    20740 1ibq:A (2.14) BS03 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    20741 1ibq:B (2.14) BS01 MAN 3.4.23.18 GO:0004190 ... Q12567 11418762
    20742 1ibq:B (2.14) BS02 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    20743 1ibq:B (2.14) BS03 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    20744 1ibq:B (2.14) BS04 ZN 3.4.23.18 GO:0004190 ... Q12567 11418762
    20745 1ibr:A (2.3) BS01 MG 3.6.5.- GO:0000054 ... P62826 10367892
    20746 1ibr:A (2.3) BS02 GNP 3.6.5.- GO:0000054 ... P62826 10367892
    20747 1ibr:C (2.3) BS01 MG 3.6.5.- GO:0000054 ... P62826 10367892
    20748 1ibr:C (2.3) BS02 GNP 3.6.5.- GO:0000054 ... P62826 10367892
    20749 1ibs:A (2.8) BS01 SO4 2.7.6.1 GO:0000287 ... P14193 11790837
    20750 1ibs:A (2.8) BS02 ABM 2.7.6.1 GO:0000287 ... P14193 11790837
    20751 1ibs:B (2.8) BS01 ABM 2.7.6.1 GO:0000287 ... P14193 11790837
    20752 1ibw:A (3.2) BS01 PVH 4.1.1.22 GO:0004398 ... P00862 11835507
    20753 1ibw:B (3.2) BS01 PYR 4.1.1.22 GO:0004398 ... P00862 11835507
    20754 1ibw:B (3.2) BS02 PVH 4.1.1.22 GO:0004398 ... P00862 11835507
    20755 1ibw:C (3.2) BS01 PVH 4.1.1.22 GO:0004398 ... P00862 11835507
    20756 1ibw:D (3.2) BS01 PYR 4.1.1.22 GO:0004398 ... P00862 11835507
    20757 1ibw:D (3.2) BS02 PVH 4.1.1.22 GO:0004398 ... P00862 11835507
    20758 1ibw:E (3.2) BS01 PVH 4.1.1.22 GO:0004398 ... P00862 11835507
    20759 1ibw:F (3.2) BS01 PYR 4.1.1.22 GO:0004398 ... P00862 11835507
    20760 1ibw:F (3.2) BS02 PVH 4.1.1.22 GO:0004398 ... P00862 11835507
    20761 1iby:A (1.65) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20762 1iby:B (1.65) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20763 1iby:C (1.65) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20764 1iby:D (1.65) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20765 1ibz:A (2.3) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20766 1ibz:B (2.3) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20767 1ibz:C (2.3) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20768 1ibz:D (2.3) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20769 1ic0:A (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20770 1ic0:B (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20771 1ic0:C (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20772 1ic0:D (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20773 1ic0:E (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20774 1ic0:F (2.1) BS01 CU ? GO:0046872 ... Q820S6 11341832
    20775 1ic6:A (0.98) BS01 CA 3.4.21.64 GO:0004252 ... P06873 11258922
    20776 1ic6:A (0.98) BS02 CA 3.4.21.64 GO:0004252 ... P06873 11258922
    20777 1ic8:A (2.6) BS01 dna ? GO:0001889 ... P20823 12453420
    20778 1ic8:A (2.6) BS02 dna ? GO:0001889 ... P20823 12453420
    20779 1ic8:B (2.6) BS01 dna ? GO:0001889 ... P20823 12453420
    20780 1ic8:B (2.6) BS02 dna ? GO:0001889 ... P20823 12453420
    20781 1icc:A (2.0) BS01 HEM ? GO:0020037 ... P04166 11583146
    20782 1icc:B (2.0) BS01 HEM ? GO:0020037 ... P04166 11583146
    20783 1icc:C (2.0) BS01 HEM ? GO:0020037 ... P04166 11583146
    20784 1icc:D (2.0) BS01 HEM ? GO:0020037 ... P04166 11583146
    20785 1ice:A (2.6) BS01 peptide 3.4.22.36 GO:0004197 ... P29466 8035875
    20786 1ice:B (2.6) BS01 peptide 3.4.22.36 GO:0004197 ... P29466 8035875
    20787 1ici:A (2.1) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 11336676
    20788 1ici:A (2.1) BS02 NAD 2.3.1.286 GO:0005737 ... O28597 11336676
    20789 1ici:B (2.1) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 11336676
    20790 1ici:B (2.1) BS02 NAD 2.3.1.286 GO:0005737 ... O28597 11336676
    20791 1icp:A (1.9) BS01 FMN 1.3.1.42 GO:0005737 ... Q9XG54 11377202
    20792 1icp:B (1.9) BS01 FMN 1.3.1.42 GO:0005737 ... Q9XG54 11377202
    20793 1icq:A (2.0) BS01 FMN 1.3.1.42 GO:0005737 ... Q9XG54 11377202
    20794 1icq:A (2.0) BS02 OPD 1.3.1.42 GO:0005737 ... Q9XG54 11377202
    20795 1icq:B (2.0) BS01 FMN 1.3.1.42 GO:0005737 ... Q9XG54 11377202
    20796 1icq:B (2.0) BS02 OPD 1.3.1.42 GO:0005737 ... Q9XG54 11377202
    20797 1icr:A (1.7) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 11491290
    20798 1icr:A (1.7) BS02 NIO 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 11491290
    20799 1icr:A (1.7) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 11491290
    20800 1icr:B (1.7) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 11491290

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218