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BioLiP
Download all results in tab-seperated text for 73 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8toc:AB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    2 8toc:AF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    3 8toc:AG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    4 8toc:AI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    5 8toc:AN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    6 8toc:AO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    7 8toc:AQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    8 8toc:AT (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    9 8toc:AU (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    10 8toc:AV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    11 8toc:AZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    12 8toc:BF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    13 8toc:BK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    14 8toc:BO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    15 8toc:BP (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    16 8toc:BS (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    17 8toc:BX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    18 8toc:BZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    19 8toc:Bc (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    20 8toc:CA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    21 8toc:CB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    22 8toc:CC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    23 8toc:CG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    24 8toc:CK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    25 8toc:CN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    26 8toc:CO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    27 8toc:CQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    28 8toc:CX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    29 8toc:DA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    30 8toc:DF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    31 8toc:DH (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    32 8toc:DI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    33 8toc:DJ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    34 8toc:DN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    35 8toc:DO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    36 8toc:DS (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    37 8toc:DT (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    38 8toc:DW (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    39 8toc:DY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    40 8toc:DZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    41 8toc:EA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    42 8toc:EB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    43 8toc:EC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    44 8toc:ED (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    45 8toc:EE (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    46 8toc:EH (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    47 8toc:EI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    48 8toc:EM (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    49 8toc:EQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    50 8toc:ES (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    51 8toc:EU (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    52 8toc:EV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    53 8toc:EW (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    54 8toc:EY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    55 8toc:Ec (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    56 8toc:FA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    57 8toc:FB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    58 8toc:FC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    59 8toc:FG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    60 8toc:FI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    61 8toc:FK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    62 8toc:FL (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    63 8toc:FM (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    64 8toc:FN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    65 8toc:FX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    66 8toc:FY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    67 8toc:GA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    68 8toc:GM (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    69 8toc:GP (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    70 8toc:GV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    71 8toc:GX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    72 8toc:a (3.11) BS01 rna ? GO:0039666 ... Q9AZ43 38553443
    73 8toc:b (3.11) BS01 rna ? GO:0039666 ... Q9AZ43 38553443
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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