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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8rbx:A (4.1) BS01 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38570683
    2 8rbx:A (4.1) BS02 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38570683
    3 8rbx:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38570683
    4 8rbx:A (4.1) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38570683
    5 8rbx:B (4.1) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38570683
    6 8rbx:B (4.1) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38570683
    7 8rbx:B (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38570683
    8 8rbx:C (4.1) BS01 ZN ? GO:0000428 ... I3LCH3 38570683
    9 8rbx:E (4.1) BS01 dna ? GO:0001054 ... I3LSI7 38570683
    10 8rbx:I (4.1) BS01 ZN ? GO:0000428 ... P60899 38570683
    11 8rbx:I (4.1) BS02 ZN ? GO:0000428 ... P60899 38570683
    12 8rbx:J (4.1) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38570683
    13 8rbx:L (4.1) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38570683
    14 8rbx:M (4.1) BS01 dna ? GO:0000786 ... Q6NXT2 38570683
    15 8rbx:M (4.1) BS02 dna ? GO:0000786 ... Q6NXT2 38570683
    16 8rbx:O (4.1) BS01 dna ? GO:0000781 ... P62805 38570683
    17 8rbx:O (4.1) BS02 dna ? GO:0000781 ... P62805 38570683
    18 8rbx:Q (4.1) BS01 dna ? GO:0000786 ... P02262 38570683
    19 8rbx:Q (4.1) BS02 dna ? GO:0000786 ... P02262 38570683
    20 8rbx:R (4.1) BS01 dna ? GO:0000786 ... P06899 38570683
    21 8rbx:S (4.1) BS01 dna ? GO:0000786 ... Q6NXT2 38570683
    22 8rbx:S (4.1) BS02 dna ? GO:0000786 ... Q6NXT2 38570683
    23 8rbx:U (4.1) BS01 dna ? GO:0000781 ... P62805 38570683
    24 8rbx:U (4.1) BS02 dna ? GO:0000781 ... P62805 38570683
    25 8rbx:V (4.1) BS01 dna ? GO:0000786 ... P02262 38570683
    26 8rbx:V (4.1) BS02 dna ? GO:0000786 ... P02262 38570683
    27 8rbx:W (4.1) BS01 dna ? GO:0000786 ... P06899 38570683
    28 8rbx:W (4.1) BS02 dna ? GO:0000786 ... P06899 38570683
    29 8rbx:Z (4.1) BS01 rna ? GO:0000122 ... O00267 38570683
    30 8rbx:b (4.1) BS01 peptide ? GO:0005515 ... Q9H0H0 38570683
    31 8rbx:b (4.1) BS02 peptide ? GO:0005515 ... Q9H0H0 38570683
    32 8rbx:f (4.1) BS01 peptide ? GO:0004888 ... Q9UL03 38570683
    33 8rbx:f (4.1) BS02 MN ? GO:0004888 ... Q9UL03 38570683
    34 8rbx:g (4.1) BS01 peptide ? GO:0000077 ... Q9NVH2 38570683
    35 8rbx:g (4.1) BS02 peptide ? GO:0000077 ... Q9NVH2 38570683
    36 8rbx:k (4.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    37 8rbx:k (4.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    38 8rbx:q (4.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    39 8rbx:v (4.1) BS01 peptide ? GO:0003723 ... Q8WX92 38570683
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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