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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jiv:CA (2.84) BS01 rna ? GO:0002181 ... W5ECL2 38458197
    2 8jiv:CB (2.84) BS01 rna ? GO:0003723 ... Q7X744 38458197
    3 8jiv:CC (2.84) BS01 rna N/A GO:0003735 ... N/A 38458197
    4 8jiv:CC (2.84) BS02 rna N/A GO:0003735 ... N/A 38458197
    5 8jiv:CD (2.84) BS01 rna ? GO:0000027 ... A0A3B6DD91 38458197
    6 8jiv:CD (2.84) BS02 rna ? GO:0000027 ... A0A3B6DD91 38458197
    7 8jiv:CE (2.84) BS01 rna ? GO:0003735 ... A0A3B6QGW3 38458197
    8 8jiv:CF (2.84) BS01 rna ? GO:0000463 ... A0A3B6DM38 38458197
    9 8jiv:CF (2.84) BS02 rna ? GO:0000463 ... A0A3B6DM38 38458197
    10 8jiv:CG (2.84) BS01 rna ? GO:0000470 ... A0A3B6RED0 38458197
    11 8jiv:CG (2.84) BS02 rna ? GO:0000470 ... A0A3B6RED0 38458197
    12 8jiv:CH (2.84) BS01 rna ? GO:0002181 ... A0A077RTE5 38458197
    13 8jiv:CI (2.84) BS01 rna ? GO:0000027 ... A0A3B6HUM3 38458197
    14 8jiv:CI (2.84) BS02 rna ? GO:0000027 ... A0A3B6HUM3 38458197
    15 8jiv:CJ (2.84) BS01 rna ? GO:0003723 ... A0A3B5XX39 38458197
    16 8jiv:CJ (2.84) BS02 rna ? GO:0003723 ... A0A3B5XX39 38458197
    17 8jiv:CL (2.84) BS01 rna ? GO:0003723 ... A0A3B6QBU0 38458197
    18 8jiv:CL (2.84) BS02 rna ? GO:0003723 ... A0A3B6QBU0 38458197
    19 8jiv:CM (2.84) BS01 rna ? GO:0003723 ... A0A3B6DGT8 38458197
    20 8jiv:CN (2.84) BS01 rna ? GO:0002181 ... W5FEX7 38458197
    21 8jiv:CN (2.84) BS02 rna ? GO:0002181 ... W5FEX7 38458197
    22 8jiv:CO (2.84) BS01 rna ? GO:0003729 ... Q5I7L1 38458197
    23 8jiv:CP (2.84) BS01 rna ? GO:0002181 ... W5FSM8 38458197
    24 8jiv:CP (2.84) BS02 rna ? GO:0002181 ... W5FSM8 38458197
    25 8jiv:CQ (2.84) BS01 rna ? GO:0003723 ... A0A3B5ZQE8 38458197
    26 8jiv:CR (2.84) BS01 rna ? GO:0003723 ... A0A3B6C2W3 38458197
    27 8jiv:CS (2.84) BS01 rna ? GO:0003735 ... A0A3B5Z5M6 38458197
    28 8jiv:CS (2.84) BS02 rna ? GO:0003735 ... A0A3B5Z5M6 38458197
    29 8jiv:CT (2.84) BS01 rna ? GO:0003735 ... F4YWL9 38458197
    30 8jiv:CT (2.84) BS02 rna ? GO:0003735 ... F4YWL9 38458197
    31 8jiv:CU (2.84) BS01 rna ? GO:0002181 ... W5C5N9 38458197
    32 8jiv:CV (2.84) BS01 rna ? GO:0003735 ... Q5I7K4 38458197
    33 8jiv:CW (2.84) BS01 rna ? GO:0002181 ... A0A3B6ELC9 38458197
    34 8jiv:CX (2.84) BS01 rna ? GO:0003735 ... A0A1D5UQZ5 38458197
    35 8jiv:CX (2.84) BS02 rna ? GO:0003735 ... A0A1D5UQZ5 38458197
    36 8jiv:CY (2.84) BS01 rna ? GO:0003723 ... A0A3B6GQI2 38458197
    37 8jiv:CY (2.84) BS02 rna ? GO:0003723 ... A0A3B6GQI2 38458197
    38 8jiv:CZ (2.84) BS01 rna ? GO:0003735 ... A0A341XZK6 38458197
    39 8jiv:Ca (2.84) BS01 rna ? GO:0003729 ... A0A3B6AUW8 38458197
    40 8jiv:Cb (2.84) BS01 rna ? GO:0002181 ... A0A1D5RRD3 38458197
    41 8jiv:Cc (2.84) BS01 rna ? GO:0003723 ... W4ZRU3 38458197
    42 8jiv:Cd (2.84) BS01 rna ? GO:0002181 ... W5G990 38458197
    43 8jiv:Ce (2.84) BS01 rna ? GO:0003735 ... A0A3B6SDD9 38458197
    44 8jiv:Cf (2.84) BS01 rna N/A GO:0003735 ... N/A 38458197
    45 8jiv:Cg (2.84) BS01 rna ? GO:0003735 ... A0A3B6RFY8 38458197
    46 8jiv:Ch (2.84) BS01 rna ? GO:0000463 ... Q8L805 38458197
    47 8jiv:Ch (2.84) BS02 rna ? GO:0000463 ... Q8L805 38458197
    48 8jiv:Ci (2.84) BS01 rna ? GO:0002181 ... A0A1D5S805 38458197
    49 8jiv:Cj (2.84) BS01 rna ? GO:0003723 ... A0A1D6BC85 38458197
    50 8jiv:Cj (2.84) BS02 rna ? GO:0003723 ... A0A1D6BC85 38458197
    51 8jiv:Cj (2.84) BS03 ZN ? GO:0003723 ... A0A1D6BC85 38458197
    52 8jiv:Ck (2.84) BS01 rna ? GO:0003735 ... A0A1D5W6Q2 38458197
    53 8jiv:Cl (2.84) BS01 rna ? GO:0003735 ... Q5I7K7 38458197
    54 8jiv:Cl (2.84) BS02 rna ? GO:0003735 ... Q5I7K7 38458197
    55 8jiv:Cm (2.84) BS01 rna ? GO:0003729 ... A0A1D5XNC2 38458197
    56 8jiv:Cm (2.84) BS02 ZN ? GO:0003729 ... A0A1D5XNC2 38458197
    57 8jiv:Co (2.84) BS01 rna ? GO:0003735 ... W5HX73 38458197
    58 8jiv:Co (2.84) BS02 ZN ? GO:0003735 ... W5HX73 38458197
    59 8jiv:Cp (2.84) BS01 rna ? GO:0003735 ... D8L9P6 38458197
    60 8jiv:Cr (2.84) BS01 rna ? GO:0003735 ... A0A3B5ZZN9 38458197
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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