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BioLiP Library
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8j9h:1A (3.11) BS01 FES N/A GO:0008137 ... N/A 38388527
    2 8j9h:1A (3.11) BS02 SF4 N/A GO:0008137 ... N/A 38388527
    3 8j9h:1A (3.11) BS03 SF4 N/A GO:0008137 ... N/A 38388527
    4 8j9h:A1 (3.11) BS01 peptide N/A N/A N/A 38388527
    5 8j9h:A6 (3.11) BS01 ZMP N/A N/A N/A 38388527
    6 8j9h:A9 (3.11) BS01 NDP N/A N/A N/A 38388527
    7 8j9h:AB (3.11) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    8 8j9h:AC (3.11) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    9 8j9h:B5 (3.11) BS01 U10 N/A N/A N/A 38388527
    10 8j9h:B7 (3.11) BS01 peptide N/A GO:0005739 ... N/A 38388527
    11 8j9h:B9 (3.11) BS01 ZMP N/A N/A N/A 38388527
    12 8j9h:E6 (3.11) BS01 peptide N/A N/A N/A 38388527
    13 8j9h:E7 (3.11) BS01 ZN N/A N/A N/A 38388527
    14 8j9h:N4 (3.11) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    15 8j9h:S2 (3.11) BS01 SF4 N/A GO:0016651 ... N/A 38388527
    16 8j9h:S6 (3.11) BS01 ZN N/A N/A N/A 38388527
    17 8j9h:S7 (3.11) BS01 SF4 N/A GO:0008137 ... N/A 38388527
    18 8j9h:S8 (3.11) BS01 SF4 N/A GO:0016020 ... N/A 38388527
    19 8j9h:S8 (3.11) BS02 SF4 N/A GO:0016020 ... N/A 38388527
    20 8j9h:V1 (3.11) BS01 FMN N/A GO:0010181 ... N/A 38388527
    21 8j9h:V1 (3.11) BS02 SF4 N/A GO:0010181 ... N/A 38388527
    22 8j9h:V2 (3.11) BS01 FES N/A GO:0016491 ... N/A 38388527
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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