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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 254 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8evs:AA (2.62) BS01 rna ? GO:0002181 ... P0CX45 37595043
    2 8evs:AA (2.62) BS02 rna ? GO:0002181 ... P0CX45 37595043
    3 8evs:AB (2.62) BS01 rna ? GO:0000027 ... P14126 37595043
    4 8evs:AC (2.62) BS01 rna ? GO:0003735 ... N/A 37595043
    5 8evs:AC (2.62) BS02 rna ? GO:0003735 ... N/A 37595043
    6 8evs:AC (2.62) BS03 MG ? GO:0003735 ... N/A 37595043
    7 8evs:AD (2.62) BS01 rna ? GO:0003735 ... N/A 37595043
    8 8evs:AD (2.62) BS02 rna ? GO:0003735 ... N/A 37595043
    9 8evs:AE (2.62) BS01 rna ? GO:0000027 ... Q02326 37595043
    10 8evs:AF (2.62) BS01 rna ? GO:0000463 ... P05737 37595043
    11 8evs:AF (2.62) BS02 rna ? GO:0000463 ... P05737 37595043
    12 8evs:AG (2.62) BS01 rna ? GO:0000470 ... P17076 37595043
    13 8evs:AG (2.62) BS02 rna ? GO:0000470 ... P17076 37595043
    14 8evs:AH (2.62) BS01 rna ? GO:0002181 ... P05738 37595043
    15 8evs:AI (2.62) BS01 rna ? GO:0003735 ... N/A 37595043
    16 8evs:AI (2.62) BS02 rna ? GO:0003735 ... N/A 37595043
    17 8evs:AJ (2.62) BS01 rna ? GO:0003735 ... N/A 37595043
    18 8evs:AJ (2.62) BS02 rna ? GO:0003735 ... N/A 37595043
    19 8evs:AL (2.62) BS01 rna ? GO:0002181 ... Q12690 37595043
    20 8evs:AL (2.62) BS02 rna ? GO:0002181 ... Q12690 37595043
    21 8evs:AM (2.62) BS01 rna ? GO:0000027 ... P36105 37595043
    22 8evs:AN (2.62) BS01 rna ? GO:0002181 ... P05748 37595043
    23 8evs:AN (2.62) BS02 rna ? GO:0002181 ... P05748 37595043
    24 8evs:AN (2.62) BS03 MG ? GO:0002181 ... P05748 37595043
    25 8evs:AO (2.62) BS01 rna ? GO:0000470 ... P26784 37595043
    26 8evs:AP (2.62) BS01 rna ? GO:0000448 ... P05740 37595043
    27 8evs:AP (2.62) BS02 rna ? GO:0000448 ... P05740 37595043
    28 8evs:AQ (2.62) BS01 rna ? GO:0002181 ... P0CX49 37595043
    29 8evs:AR (2.62) BS01 rna ? GO:0002181 ... P0CX82 37595043
    30 8evs:AR (2.62) BS02 rna ? GO:0002181 ... P0CX82 37595043
    31 8evs:AS (2.62) BS01 rna ? GO:0003735 ... B3LMD0 37595043
    32 8evs:AS (2.62) BS02 rna ? GO:0003735 ... B3LMD0 37595043
    33 8evs:AT (2.62) BS01 rna ? GO:0002181 ... Q02753 37595043
    34 8evs:AT (2.62) BS02 rna ? GO:0002181 ... Q02753 37595043
    35 8evs:AU (2.62) BS01 rna ? GO:0002181 ... P05749 37595043
    36 8evs:AV (2.62) BS01 rna ? GO:0002181 ... P0CX41 37595043
    37 8evs:AW (2.62) BS01 rna ? N/A N/A 37595043
    38 8evs:AX (2.62) BS01 rna ? GO:0000027 ... P04456 37595043
    39 8evs:AX (2.62) BS02 rna ? GO:0000027 ... P04456 37595043
    40 8evs:AY (2.62) BS01 rna ? GO:0002181 ... P05743 37595043
    41 8evs:AY (2.62) BS02 rna ? GO:0002181 ... P05743 37595043
    42 8evs:AZ (2.62) BS01 rna ? GO:0002181 ... P0C2H6 37595043
    43 8evs:Aa (2.62) BS01 rna ? GO:0002181 ... P02406 37595043
    44 8evs:Ab (2.62) BS01 rna ? GO:0003735 ... N/A 37595043
    45 8evs:Ac (2.62) BS01 rna ? GO:0002181 ... P14120 37595043
    46 8evs:Ad (2.62) BS01 rna ? GO:0002181 ... P0C2H8 37595043
    47 8evs:Ae (2.62) BS01 rna ? GO:0003735 ... N/A 37595043
    48 8evs:Ae (2.62) BS02 MG ? GO:0003735 ... N/A 37595043
    49 8evs:Ae (2.62) BS03 MG ? GO:0003735 ... N/A 37595043
    50 8evs:Af (2.62) BS01 rna ? GO:0000027 ... P05744 37595043
    51 8evs:Af (2.62) BS02 MG ? GO:0000027 ... P05744 37595043
    52 8evs:Ag (2.62) BS01 rna ? GO:0002181 ... P87262 37595043
    53 8evs:Ah (2.62) BS01 rna ? GO:0000463 ... P0CX84 37595043
    54 8evs:Ah (2.62) BS02 rna ? GO:0000463 ... P0CX84 37595043
    55 8evs:Ah (2.62) BS03 MG ? GO:0000463 ... P0CX84 37595043
    56 8evs:Ai (2.62) BS01 rna ? GO:0002181 ... P05745 37595043
    57 8evs:Aj (2.62) BS01 rna ? GO:0000448 ... P49166 37595043
    58 8evs:Aj (2.62) BS02 rna ? GO:0000448 ... P49166 37595043
    59 8evs:Aj (2.62) BS03 MG ? GO:0000448 ... P49166 37595043
    60 8evs:Ak (2.62) BS01 rna ? GO:0003735 ... N/A 37595043
    61 8evs:Al (2.62) BS01 rna ? GO:0002181 ... P04650 37595043
    62 8evs:Al (2.62) BS02 rna ? GO:0002181 ... P04650 37595043
    63 8evs:Am (2.62) BS01 rna ? GO:0000027 ... P0CH08 37595043
    64 8evs:Ao (2.62) BS01 rna ? GO:0002181 ... P0CX27 37595043
    65 8evs:Ao (2.62) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    66 8evs:Ap (2.62) BS01 rna ? GO:0002181 ... P0CX25 37595043
    67 8evs:BA (2.62) BS01 A ? GO:0000028 ... P32905 37595043
    68 8evs:BB (2.62) BS01 rna ? GO:0003735 ... N/A 37595043
    69 8evs:BB (2.62) BS02 U ? GO:0003735 ... N/A 37595043
    70 8evs:BC (2.62) BS01 rna ? GO:0003723 ... N/A 37595043
    71 8evs:BC (2.62) BS02 U ? GO:0003723 ... N/A 37595043
    72 8evs:BC (2.62) BS03 U ? GO:0003723 ... N/A 37595043
    73 8evs:BD (2.62) BS01 U ? GO:0003723 ... N/A 37595043
    74 8evs:BD (2.62) BS02 G ? GO:0003723 ... N/A 37595043
    75 8evs:BD (2.62) BS03 G ? GO:0003723 ... N/A 37595043
    76 8evs:BD (2.62) BS04 C ? GO:0003723 ... N/A 37595043
    77 8evs:BD (2.62) BS05 A ? GO:0003723 ... N/A 37595043
    78 8evs:BD (2.62) BS06 G ? GO:0003723 ... N/A 37595043
    79 8evs:BD (2.62) BS07 C ? GO:0003723 ... N/A 37595043
    80 8evs:BD (2.62) BS08 U ? GO:0003723 ... N/A 37595043
    81 8evs:BD (2.62) BS09 U ? GO:0003723 ... N/A 37595043
    82 8evs:BD (2.62) BS10 A ? GO:0003723 ... N/A 37595043
    83 8evs:BE (2.62) BS01 rna ? GO:0002181 ... P0CX35 37595043
    84 8evs:BF (2.62) BS01 rna ? GO:0000028 ... A0A1L4AA68 37595043
    85 8evs:BF (2.62) BS02 rna ? GO:0000028 ... A0A1L4AA68 37595043
    86 8evs:BF (2.62) BS03 A ? GO:0000028 ... A0A1L4AA68 37595043
    87 8evs:BF (2.62) BS04 C ? GO:0000028 ... A0A1L4AA68 37595043
    88 8evs:BF (2.62) BS05 U ? GO:0000028 ... A0A1L4AA68 37595043
    89 8evs:BF (2.62) BS06 U ? GO:0000028 ... A0A1L4AA68 37595043
    90 8evs:BF (2.62) BS07 U ? GO:0000028 ... A0A1L4AA68 37595043
    91 8evs:BF (2.62) BS08 A ? GO:0000028 ... A0A1L4AA68 37595043
    92 8evs:BF (2.62) BS09 G ? GO:0000028 ... A0A1L4AA68 37595043
    93 8evs:BF (2.62) BS10 G ? GO:0000028 ... A0A1L4AA68 37595043
    94 8evs:BF (2.62) BS11 A ? GO:0000028 ... A0A1L4AA68 37595043
    95 8evs:BF (2.62) BS12 U ? GO:0000028 ... A0A1L4AA68 37595043
    96 8evs:BF (2.62) BS13 A ? GO:0000028 ... A0A1L4AA68 37595043
    97 8evs:BF (2.62) BS14 C ? GO:0000028 ... A0A1L4AA68 37595043
    98 8evs:BG (2.62) BS01 rna ? GO:0000462 ... P0CX37 37595043
    99 8evs:BG (2.62) BS02 A ? GO:0000462 ... P0CX37 37595043
    100 8evs:BG (2.62) BS03 U ? GO:0000462 ... P0CX37 37595043
    101 8evs:BG (2.62) BS04 G ? GO:0000462 ... P0CX37 37595043
    102 8evs:BH (2.62) BS01 rna ? GO:0002181 ... P26786 37595043
    103 8evs:BI (2.62) BS01 rna ? GO:0000462 ... P0CX39 37595043
    104 8evs:BI (2.62) BS02 rna ? GO:0000462 ... P0CX39 37595043
    105 8evs:BI (2.62) BS03 C ? GO:0000462 ... P0CX39 37595043
    106 8evs:BI (2.62) BS04 A ? GO:0000462 ... P0CX39 37595043
    107 8evs:BJ (2.62) BS01 rna ? GO:0000462 ... O13516 37595043
    108 8evs:BK (2.62) BS01 A ? GO:0000054 ... Q08745 37595043
    109 8evs:BK (2.62) BS02 A ? GO:0000054 ... Q08745 37595043
    110 8evs:BK (2.62) BS03 C ? GO:0000054 ... Q08745 37595043
    111 8evs:BK (2.62) BS04 U ? GO:0000054 ... Q08745 37595043
    112 8evs:BK (2.62) BS05 U ? GO:0000054 ... Q08745 37595043
    113 8evs:BK (2.62) BS06 G ? GO:0000054 ... Q08745 37595043
    114 8evs:BL (2.62) BS01 rna ? GO:0000028 ... P0CX47 37595043
    115 8evs:BM (2.62) BS01 U ? GO:0003735 ... N/A 37595043
    116 8evs:BM (2.62) BS02 G ? GO:0003735 ... N/A 37595043
    117 8evs:BM (2.62) BS03 G ? GO:0003735 ... N/A 37595043
    118 8evs:BM (2.62) BS04 U ? GO:0003735 ... N/A 37595043
    119 8evs:BM (2.62) BS05 A ? GO:0003735 ... N/A 37595043
    120 8evs:BN (2.62) BS01 rna ? GO:0000462 ... P05756 37595043
    121 8evs:BN (2.62) BS02 rna ? GO:0000462 ... P05756 37595043
    122 8evs:BO (2.62) BS01 rna ? GO:0000028 ... P06367 37595043
    123 8evs:BO (2.62) BS02 U ? GO:0000028 ... P06367 37595043
    124 8evs:BO (2.62) BS03 C ? GO:0000028 ... P06367 37595043
    125 8evs:BO (2.62) BS04 U ? GO:0000028 ... P06367 37595043
    126 8evs:BO (2.62) BS05 G ? GO:0000028 ... P06367 37595043
    127 8evs:BP (2.62) BS01 rna ? GO:0003723 ... N/A 37595043
    128 8evs:BP (2.62) BS02 rna ? GO:0003723 ... N/A 37595043
    129 8evs:BP (2.62) BS03 A ? GO:0003723 ... N/A 37595043
    130 8evs:BP (2.62) BS04 G ? GO:0003723 ... N/A 37595043
    131 8evs:BP (2.62) BS05 G ? GO:0003723 ... N/A 37595043
    132 8evs:BP (2.62) BS06 C ? GO:0003723 ... N/A 37595043
    133 8evs:BP (2.62) BS07 U ? GO:0003723 ... N/A 37595043
    134 8evs:BP (2.62) BS08 U ? GO:0003723 ... N/A 37595043
    135 8evs:BP (2.62) BS09 G ? GO:0003723 ... N/A 37595043
    136 8evs:BP (2.62) BS10 A ? GO:0003723 ... N/A 37595043
    137 8evs:BP (2.62) BS11 U ? GO:0003723 ... N/A 37595043
    138 8evs:BP (2.62) BS12 C ? GO:0003723 ... N/A 37595043
    139 8evs:BP (2.62) BS13 U ? GO:0003723 ... N/A 37595043
    140 8evs:BP (2.62) BS14 G ? GO:0003723 ... N/A 37595043
    141 8evs:BP (2.62) BS15 G ? GO:0003723 ... N/A 37595043
    142 8evs:BQ (2.62) BS01 rna ? GO:0000462 ... P0CX51 37595043
    143 8evs:BQ (2.62) BS02 U ? GO:0000462 ... P0CX51 37595043
    144 8evs:BQ (2.62) BS03 A ? GO:0000462 ... P0CX51 37595043
    145 8evs:BQ (2.62) BS04 C ? GO:0000462 ... P0CX51 37595043
    146 8evs:BQ (2.62) BS05 A ? GO:0000462 ... P0CX51 37595043
    147 8evs:BQ (2.62) BS06 G ? GO:0000462 ... P0CX51 37595043
    148 8evs:BQ (2.62) BS07 U ? GO:0000462 ... P0CX51 37595043
    149 8evs:BQ (2.62) BS08 A ? GO:0000462 ... P0CX51 37595043
    150 8evs:BQ (2.62) BS09 U ? GO:0000462 ... P0CX51 37595043
    151 8evs:BQ (2.62) BS10 C ? GO:0000462 ... P0CX51 37595043
    152 8evs:BQ (2.62) BS11 U ? GO:0000462 ... P0CX51 37595043
    153 8evs:BQ (2.62) BS12 U ? GO:0000462 ... P0CX51 37595043
    154 8evs:BQ (2.62) BS13 U ? GO:0000462 ... P0CX51 37595043
    155 8evs:BQ (2.62) BS14 C ? GO:0000462 ... P0CX51 37595043
    156 8evs:BR (2.62) BS01 U ? GO:0000028 ... P02407 37595043
    157 8evs:BR (2.62) BS02 G ? GO:0000028 ... P02407 37595043
    158 8evs:BR (2.62) BS03 C ? GO:0000028 ... P02407 37595043
    159 8evs:BR (2.62) BS04 G ? GO:0000028 ... P02407 37595043
    160 8evs:BR (2.62) BS05 C ? GO:0000028 ... P02407 37595043
    161 8evs:BR (2.62) BS06 U ? GO:0000028 ... P02407 37595043
    162 8evs:BR (2.62) BS07 A ? GO:0000028 ... P02407 37595043
    163 8evs:BR (2.62) BS08 G ? GO:0000028 ... P02407 37595043
    164 8evs:BS (2.62) BS01 rna ? GO:0000054 ... P0CX55 37595043
    165 8evs:BS (2.62) BS02 C ? GO:0000054 ... P0CX55 37595043
    166 8evs:BS (2.62) BS03 G ? GO:0000054 ... P0CX55 37595043
    167 8evs:BS (2.62) BS04 A ? GO:0000054 ... P0CX55 37595043
    168 8evs:BS (2.62) BS05 G ? GO:0000054 ... P0CX55 37595043
    169 8evs:BS (2.62) BS06 A ? GO:0000054 ... P0CX55 37595043
    170 8evs:BS (2.62) BS07 G ? GO:0000054 ... P0CX55 37595043
    171 8evs:BS (2.62) BS08 U ? GO:0000054 ... P0CX55 37595043
    172 8evs:BS (2.62) BS09 A ? GO:0000054 ... P0CX55 37595043
    173 8evs:BS (2.62) BS10 C ? GO:0000054 ... P0CX55 37595043
    174 8evs:BS (2.62) BS11 U ? GO:0000054 ... P0CX55 37595043
    175 8evs:BS (2.62) BS12 U ? GO:0000054 ... P0CX55 37595043
    176 8evs:BS (2.62) BS13 G ? GO:0000054 ... P0CX55 37595043
    177 8evs:BT (2.62) BS01 G ? GO:0000028 ... P07280 37595043
    178 8evs:BT (2.62) BS02 C ? GO:0000028 ... P07280 37595043
    179 8evs:BT (2.62) BS03 A ? GO:0000028 ... P07280 37595043
    180 8evs:BT (2.62) BS04 U ? GO:0000028 ... P07280 37595043
    181 8evs:BT (2.62) BS05 C ? GO:0000028 ... P07280 37595043
    182 8evs:BT (2.62) BS06 G ? GO:0000028 ... P07280 37595043
    183 8evs:BT (2.62) BS07 A ? GO:0000028 ... P07280 37595043
    184 8evs:BT (2.62) BS08 G ? GO:0000028 ... P07280 37595043
    185 8evs:BT (2.62) BS09 G ? GO:0000028 ... P07280 37595043
    186 8evs:BT (2.62) BS10 G ? GO:0000028 ... P07280 37595043
    187 8evs:BT (2.62) BS11 G ? GO:0000028 ... P07280 37595043
    188 8evs:BT (2.62) BS12 G ? GO:0000028 ... P07280 37595043
    189 8evs:BT (2.62) BS13 G ? GO:0000028 ... P07280 37595043
    190 8evs:BT (2.62) BS14 C ? GO:0000028 ... P07280 37595043
    191 8evs:BT (2.62) BS15 U ? GO:0000028 ... P07280 37595043
    192 8evs:BT (2.62) BS16 G ? GO:0000028 ... P07280 37595043
    193 8evs:BU (2.62) BS01 U ? GO:0003723 ... N/A 37595043
    194 8evs:BU (2.62) BS02 A ? GO:0003723 ... N/A 37595043
    195 8evs:BU (2.62) BS03 U ? GO:0003723 ... N/A 37595043
    196 8evs:BU (2.62) BS04 A ? GO:0003723 ... N/A 37595043
    197 8evs:BU (2.62) BS05 G ? GO:0003723 ... N/A 37595043
    198 8evs:BU (2.62) BS06 G ? GO:0003723 ... N/A 37595043
    199 8evs:BU (2.62) BS07 A ? GO:0003723 ... N/A 37595043
    200 8evs:BU (2.62) BS08 G ? GO:0003723 ... N/A 37595043
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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