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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 308 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cmo:1 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    2 8cmo:1 (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    3 8cmo:1 (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    4 8cmo:1 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    5 8cmo:1 (2.81) BS05 CLA N/A GO:0009765 ... N/A N/A
    6 8cmo:1 (2.81) BS06 CLA N/A GO:0009765 ... N/A N/A
    7 8cmo:1 (2.81) BS07 CLA N/A GO:0009765 ... N/A N/A
    8 8cmo:1 (2.81) BS08 CLA N/A GO:0009765 ... N/A N/A
    9 8cmo:1 (2.81) BS09 CLA N/A GO:0009765 ... N/A N/A
    10 8cmo:1 (2.81) BS10 CHL N/A GO:0009765 ... N/A N/A
    11 8cmo:1 (2.81) BS11 CLA N/A GO:0009765 ... N/A N/A
    12 8cmo:1 (2.81) BS12 CLA N/A GO:0009765 ... N/A N/A
    13 8cmo:1 (2.81) BS13 CLA N/A GO:0009765 ... N/A N/A
    14 8cmo:1 (2.81) BS14 CLA N/A GO:0009765 ... N/A N/A
    15 8cmo:1 (2.81) BS15 CHL N/A GO:0009765 ... N/A N/A
    16 8cmo:2 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    17 8cmo:2 (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    18 8cmo:2 (2.81) BS03 CHL N/A GO:0009765 ... N/A N/A
    19 8cmo:2 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    20 8cmo:3 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    21 8cmo:3 (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    22 8cmo:3 (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    23 8cmo:3 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    24 8cmo:3 (2.81) BS05 CLA N/A GO:0009765 ... N/A N/A
    25 8cmo:3 (2.81) BS06 CLA N/A GO:0009765 ... N/A N/A
    26 8cmo:3 (2.81) BS07 CLA N/A GO:0009765 ... N/A N/A
    27 8cmo:3 (2.81) BS08 CLA N/A GO:0009765 ... N/A N/A
    28 8cmo:3 (2.81) BS09 CLA N/A GO:0009765 ... N/A N/A
    29 8cmo:3 (2.81) BS10 CLA N/A GO:0009765 ... N/A N/A
    30 8cmo:3 (2.81) BS11 CLA N/A GO:0009765 ... N/A N/A
    31 8cmo:3 (2.81) BS12 CLA N/A GO:0009765 ... N/A N/A
    32 8cmo:3 (2.81) BS13 CLA N/A GO:0009765 ... N/A N/A
    33 8cmo:3 (2.81) BS14 CLA N/A GO:0009765 ... N/A N/A
    34 8cmo:3 (2.81) BS15 CHL N/A GO:0009765 ... N/A N/A
    35 8cmo:3 (2.81) BS16 CLA N/A GO:0009765 ... N/A N/A
    36 8cmo:3 (2.81) BS17 CLA N/A GO:0009765 ... N/A N/A
    37 8cmo:3 (2.81) BS18 CLA N/A GO:0009765 ... N/A N/A
    38 8cmo:3 (2.81) BS19 CLA N/A GO:0009765 ... N/A N/A
    39 8cmo:3 (2.81) BS20 CLA N/A GO:0009765 ... N/A N/A
    40 8cmo:4 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    41 8cmo:4 (2.81) BS02 CHL N/A GO:0009765 ... N/A N/A
    42 8cmo:4 (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    43 8cmo:4 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    44 8cmo:4 (2.81) BS05 CLA N/A GO:0009765 ... N/A N/A
    45 8cmo:4 (2.81) BS06 CLA N/A GO:0009765 ... N/A N/A
    46 8cmo:4 (2.81) BS07 CLA N/A GO:0009765 ... N/A N/A
    47 8cmo:4 (2.81) BS08 CLA N/A GO:0009765 ... N/A N/A
    48 8cmo:4 (2.81) BS09 CLA N/A GO:0009765 ... N/A N/A
    49 8cmo:4 (2.81) BS10 CLA N/A GO:0009765 ... N/A N/A
    50 8cmo:4 (2.81) BS11 CHL N/A GO:0009765 ... N/A N/A
    51 8cmo:4 (2.81) BS12 CHL N/A GO:0009765 ... N/A N/A
    52 8cmo:4 (2.81) BS13 CLA N/A GO:0009765 ... N/A N/A
    53 8cmo:4 (2.81) BS14 CHL N/A GO:0009765 ... N/A N/A
    54 8cmo:4 (2.81) BS15 CLA N/A GO:0009765 ... N/A N/A
    55 8cmo:4 (2.81) BS16 CLA N/A GO:0009765 ... N/A N/A
    56 8cmo:4 (2.81) BS17 CHL N/A GO:0009765 ... N/A N/A
    57 8cmo:4 (2.81) BS18 CLA N/A GO:0009765 ... N/A N/A
    58 8cmo:5 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    59 8cmo:5 (2.81) BS02 C7Z N/A GO:0009765 ... N/A N/A
    60 8cmo:5 (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    61 8cmo:5 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    62 8cmo:5 (2.81) BS05 CLA N/A GO:0009765 ... N/A N/A
    63 8cmo:5 (2.81) BS06 CLA N/A GO:0009765 ... N/A N/A
    64 8cmo:5 (2.81) BS07 CLA N/A GO:0009765 ... N/A N/A
    65 8cmo:5 (2.81) BS08 CLA N/A GO:0009765 ... N/A N/A
    66 8cmo:5 (2.81) BS09 CLA N/A GO:0009765 ... N/A N/A
    67 8cmo:5 (2.81) BS10 CLA N/A GO:0009765 ... N/A N/A
    68 8cmo:5 (2.81) BS11 CLA N/A GO:0009765 ... N/A N/A
    69 8cmo:5 (2.81) BS12 CHL N/A GO:0009765 ... N/A N/A
    70 8cmo:5 (2.81) BS13 CHL N/A GO:0009765 ... N/A N/A
    71 8cmo:5 (2.81) BS14 CLA N/A GO:0009765 ... N/A N/A
    72 8cmo:5 (2.81) BS15 CLA N/A GO:0009765 ... N/A N/A
    73 8cmo:5 (2.81) BS16 CLA N/A GO:0009765 ... N/A N/A
    74 8cmo:5 (2.81) BS17 CHL N/A GO:0009765 ... N/A N/A
    75 8cmo:5 (2.81) BS18 CLA N/A GO:0009765 ... N/A N/A
    76 8cmo:5 (2.81) BS19 CLA N/A GO:0009765 ... N/A N/A
    77 8cmo:5 (2.81) BS20 CLA N/A GO:0009765 ... N/A N/A
    78 8cmo:5 (2.81) BS21 CLA N/A GO:0009765 ... N/A N/A
    79 8cmo:6 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    80 8cmo:6 (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    81 8cmo:6 (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    82 8cmo:6 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    83 8cmo:6 (2.81) BS05 CLA N/A GO:0009765 ... N/A N/A
    84 8cmo:6 (2.81) BS06 CLA N/A GO:0009765 ... N/A N/A
    85 8cmo:6 (2.81) BS07 CLA N/A GO:0009765 ... N/A N/A
    86 8cmo:6 (2.81) BS08 CLA N/A GO:0009765 ... N/A N/A
    87 8cmo:6 (2.81) BS09 CLA N/A GO:0009765 ... N/A N/A
    88 8cmo:6 (2.81) BS10 CLA N/A GO:0009765 ... N/A N/A
    89 8cmo:6 (2.81) BS11 CLA N/A GO:0009765 ... N/A N/A
    90 8cmo:6 (2.81) BS12 CLA N/A GO:0009765 ... N/A N/A
    91 8cmo:6 (2.81) BS13 CLA N/A GO:0009765 ... N/A N/A
    92 8cmo:6 (2.81) BS14 CHL N/A GO:0009765 ... N/A N/A
    93 8cmo:6 (2.81) BS15 CHL N/A GO:0009765 ... N/A N/A
    94 8cmo:6 (2.81) BS16 CLA N/A GO:0009765 ... N/A N/A
    95 8cmo:6 (2.81) BS17 CHL N/A GO:0009765 ... N/A N/A
    96 8cmo:6 (2.81) BS18 CLA N/A GO:0009765 ... N/A N/A
    97 8cmo:6 (2.81) BS19 CHL N/A GO:0009765 ... N/A N/A
    98 8cmo:6 (2.81) BS20 CLA N/A GO:0009765 ... N/A N/A
    99 8cmo:6 (2.81) BS21 CLA N/A GO:0009765 ... N/A N/A
    100 8cmo:7 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    101 8cmo:7 (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    102 8cmo:7 (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    103 8cmo:7 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    104 8cmo:7 (2.81) BS05 CLA N/A GO:0009765 ... N/A N/A
    105 8cmo:7 (2.81) BS06 CLA N/A GO:0009765 ... N/A N/A
    106 8cmo:7 (2.81) BS07 CLA N/A GO:0009765 ... N/A N/A
    107 8cmo:7 (2.81) BS08 CLA N/A GO:0009765 ... N/A N/A
    108 8cmo:7 (2.81) BS09 CLA N/A GO:0009765 ... N/A N/A
    109 8cmo:7 (2.81) BS10 CLA N/A GO:0009765 ... N/A N/A
    110 8cmo:7 (2.81) BS11 CHL N/A GO:0009765 ... N/A N/A
    111 8cmo:7 (2.81) BS12 CLA N/A GO:0009765 ... N/A N/A
    112 8cmo:7 (2.81) BS13 CLA N/A GO:0009765 ... N/A N/A
    113 8cmo:7 (2.81) BS14 CLA N/A GO:0009765 ... N/A N/A
    114 8cmo:7 (2.81) BS15 CLA N/A GO:0009765 ... N/A N/A
    115 8cmo:7 (2.81) BS16 CLA N/A GO:0009765 ... N/A N/A
    116 8cmo:7 (2.81) BS17 CLA N/A GO:0009765 ... N/A N/A
    117 8cmo:7 (2.81) BS18 CLA N/A GO:0009765 ... N/A N/A
    118 8cmo:8 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    119 8cmo:8 (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    120 8cmo:8 (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    121 8cmo:8 (2.81) BS04 CHL N/A GO:0009765 ... N/A N/A
    122 8cmo:8 (2.81) BS05 CLA N/A GO:0009765 ... N/A N/A
    123 8cmo:8 (2.81) BS06 CLA N/A GO:0009765 ... N/A N/A
    124 8cmo:8 (2.81) BS07 CLA N/A GO:0009765 ... N/A N/A
    125 8cmo:8 (2.81) BS08 CLA N/A GO:0009765 ... N/A N/A
    126 8cmo:8 (2.81) BS09 CLA N/A GO:0009765 ... N/A N/A
    127 8cmo:8 (2.81) BS10 CLA N/A GO:0009765 ... N/A N/A
    128 8cmo:8 (2.81) BS11 CLA N/A GO:0009765 ... N/A N/A
    129 8cmo:8 (2.81) BS12 CHL N/A GO:0009765 ... N/A N/A
    130 8cmo:8 (2.81) BS13 CLA N/A GO:0009765 ... N/A N/A
    131 8cmo:8 (2.81) BS14 CLA N/A GO:0009765 ... N/A N/A
    132 8cmo:8 (2.81) BS15 CHL N/A GO:0009765 ... N/A N/A
    133 8cmo:8 (2.81) BS16 CLA N/A GO:0009765 ... N/A N/A
    134 8cmo:9 (2.81) BS01 CLA N/A GO:0009765 ... N/A N/A
    135 8cmo:9 (2.81) BS02 CLA N/A GO:0009765 ... N/A N/A
    136 8cmo:9 (2.81) BS03 CLA N/A GO:0009765 ... N/A N/A
    137 8cmo:9 (2.81) BS04 CLA N/A GO:0009765 ... N/A N/A
    138 8cmo:9 (2.81) BS05 CLA N/A GO:0009765 ... N/A N/A
    139 8cmo:9 (2.81) BS06 CLA N/A GO:0009765 ... N/A N/A
    140 8cmo:9 (2.81) BS07 CLA N/A GO:0009765 ... N/A N/A
    141 8cmo:9 (2.81) BS08 CLA N/A GO:0009765 ... N/A N/A
    142 8cmo:9 (2.81) BS09 CLA N/A GO:0009765 ... N/A N/A
    143 8cmo:9 (2.81) BS10 CLA N/A GO:0009765 ... N/A N/A
    144 8cmo:9 (2.81) BS11 CLA N/A GO:0009765 ... N/A N/A
    145 8cmo:9 (2.81) BS12 CHL N/A GO:0009765 ... N/A N/A
    146 8cmo:9 (2.81) BS13 CLA N/A GO:0009765 ... N/A N/A
    147 8cmo:9 (2.81) BS14 CHL N/A GO:0009765 ... N/A N/A
    148 8cmo:9 (2.81) BS15 CHL N/A GO:0009765 ... N/A N/A
    149 8cmo:A (2.81) BS01 CL0 N/A GO:0009579 ... N/A N/A
    150 8cmo:A (2.81) BS02 CLA N/A GO:0009579 ... N/A N/A
    151 8cmo:A (2.81) BS03 CLA N/A GO:0009579 ... N/A N/A
    152 8cmo:A (2.81) BS04 CLA N/A GO:0009579 ... N/A N/A
    153 8cmo:A (2.81) BS05 CLA N/A GO:0009579 ... N/A N/A
    154 8cmo:A (2.81) BS06 CLA N/A GO:0009579 ... N/A N/A
    155 8cmo:A (2.81) BS07 CLA N/A GO:0009579 ... N/A N/A
    156 8cmo:A (2.81) BS08 CLA N/A GO:0009579 ... N/A N/A
    157 8cmo:A (2.81) BS09 CLA N/A GO:0009579 ... N/A N/A
    158 8cmo:A (2.81) BS10 CLA N/A GO:0009579 ... N/A N/A
    159 8cmo:A (2.81) BS11 CLA N/A GO:0009579 ... N/A N/A
    160 8cmo:A (2.81) BS12 CLA N/A GO:0009579 ... N/A N/A
    161 8cmo:A (2.81) BS13 CLA N/A GO:0009579 ... N/A N/A
    162 8cmo:A (2.81) BS14 CLA N/A GO:0009579 ... N/A N/A
    163 8cmo:A (2.81) BS15 CLA N/A GO:0009579 ... N/A N/A
    164 8cmo:A (2.81) BS16 CLA N/A GO:0009579 ... N/A N/A
    165 8cmo:A (2.81) BS17 CLA N/A GO:0009579 ... N/A N/A
    166 8cmo:A (2.81) BS18 CLA N/A GO:0009579 ... N/A N/A
    167 8cmo:A (2.81) BS19 CLA N/A GO:0009579 ... N/A N/A
    168 8cmo:A (2.81) BS20 CLA N/A GO:0009579 ... N/A N/A
    169 8cmo:A (2.81) BS21 CLA N/A GO:0009579 ... N/A N/A
    170 8cmo:A (2.81) BS22 CLA N/A GO:0009579 ... N/A N/A
    171 8cmo:A (2.81) BS23 CLA N/A GO:0009579 ... N/A N/A
    172 8cmo:A (2.81) BS24 CLA N/A GO:0009579 ... N/A N/A
    173 8cmo:A (2.81) BS25 CLA N/A GO:0009579 ... N/A N/A
    174 8cmo:A (2.81) BS26 CLA N/A GO:0009579 ... N/A N/A
    175 8cmo:A (2.81) BS27 CLA N/A GO:0009579 ... N/A N/A
    176 8cmo:A (2.81) BS28 CLA N/A GO:0009579 ... N/A N/A
    177 8cmo:A (2.81) BS29 CLA N/A GO:0009579 ... N/A N/A
    178 8cmo:A (2.81) BS30 CLA N/A GO:0009579 ... N/A N/A
    179 8cmo:A (2.81) BS31 CLA N/A GO:0009579 ... N/A N/A
    180 8cmo:A (2.81) BS32 CLA N/A GO:0009579 ... N/A N/A
    181 8cmo:A (2.81) BS33 CLA N/A GO:0009579 ... N/A N/A
    182 8cmo:A (2.81) BS34 CLA N/A GO:0009579 ... N/A N/A
    183 8cmo:A (2.81) BS35 CLA N/A GO:0009579 ... N/A N/A
    184 8cmo:A (2.81) BS36 CLA N/A GO:0009579 ... N/A N/A
    185 8cmo:A (2.81) BS37 CLA N/A GO:0009579 ... N/A N/A
    186 8cmo:A (2.81) BS38 CLA N/A GO:0009579 ... N/A N/A
    187 8cmo:A (2.81) BS39 CLA N/A GO:0009579 ... N/A N/A
    188 8cmo:A (2.81) BS40 CLA N/A GO:0009579 ... N/A N/A
    189 8cmo:A (2.81) BS41 CLA N/A GO:0009579 ... N/A N/A
    190 8cmo:A (2.81) BS42 PQN N/A GO:0009579 ... N/A N/A
    191 8cmo:A (2.81) BS43 CLA N/A GO:0009579 ... N/A N/A
    192 8cmo:A (2.81) BS44 CLA N/A GO:0009579 ... N/A N/A
    193 8cmo:A (2.81) BS45 CLA N/A GO:0009579 ... N/A N/A
    194 8cmo:A (2.81) BS46 SF4 N/A GO:0009579 ... N/A N/A
    195 8cmo:A (2.81) BS47 CLA N/A GO:0009579 ... N/A N/A
    196 8cmo:A (2.81) BS48 CLA N/A GO:0009579 ... N/A N/A
    197 8cmo:A (2.81) BS49 CLA N/A GO:0009579 ... N/A N/A
    198 8cmo:A (2.81) BS50 CLA N/A GO:0009579 ... N/A N/A
    199 8cmo:A (2.81) BS51 CLA N/A GO:0009579 ... N/A N/A
    200 8cmo:A (2.81) BS52 C7Z N/A GO:0009579 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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