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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7tz6:A (2.88) BS01 peptide ? GO:0005739 ... P31800 37236355
    2 7tz6:B (2.88) BS01 peptide ? GO:0004222 ... P23004 37236355
    3 7tz6:C (2.88) BS01 HEM ? GO:0005739 ... P00157 37236355
    4 7tz6:C (2.88) BS02 HEM ? GO:0005739 ... P00157 37236355
    5 7tz6:C (2.88) BS03 JHB ? GO:0005739 ... P00157 37236355
    6 7tz6:D (2.88) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 37236355
    7 7tz6:E (2.88) BS01 FES 7.1.1.8 GO:0008121 ... P13272 37236355
    8 7tz6:N (2.88) BS01 peptide ? GO:0005739 ... P31800 37236355
    9 7tz6:O (2.88) BS01 peptide ? GO:0004222 ... P23004 37236355
    10 7tz6:P (2.88) BS01 HEM ? GO:0005739 ... P00157 37236355
    11 7tz6:P (2.88) BS02 HEM ? GO:0005739 ... P00157 37236355
    12 7tz6:P (2.88) BS03 JHB ? GO:0005739 ... P00157 37236355
    13 7tz6:Q (2.88) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 37236355
    14 7tz6:R (2.88) BS01 FES 7.1.1.8 GO:0008121 ... P13272 37236355
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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