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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7s1g:1 (2.48) BS01 rna ? GO:0000028 ... P0A7U3 35165456
    2 7s1g:2 (2.48) BS01 rna ? GO:0000028 ... P0A7U7 35165456
    3 7s1g:3 (2.48) BS01 rna ? GO:0000028 ... P68679 35165456
    4 7s1g:D (2.48) BS01 rna ? GO:0000028 ... P0A7V0 35165456
    5 7s1g:E (2.48) BS01 rna ? GO:0000028 ... P0A7V3 35165456
    6 7s1g:F (2.48) BS01 rna ? GO:0000028 ... P0A7V8 35165456
    7 7s1g:G (2.48) BS01 rna ? GO:0000028 ... P0A7W1 35165456
    8 7s1g:H (2.48) BS01 rna ? GO:0002181 ... P02358 35165456
    9 7s1g:K (2.48) BS01 rna ? GO:0000027 ... P60422 35165456
    10 7s1g:K (2.48) BS02 rna ? GO:0000027 ... P60422 35165456
    11 7s1g:K (2.48) BS03 MG ? GO:0000027 ... P60422 35165456
    12 7s1g:L (2.48) BS01 rna ? GO:0000027 ... P60438 35165456
    13 7s1g:M (2.48) BS01 rna ? GO:0001070 ... P60723 35165456
    14 7s1g:N (2.48) BS01 rna ? GO:0000027 ... P62399 35165456
    15 7s1g:N (2.48) BS02 rna ? GO:0000027 ... P62399 35165456
    16 7s1g:N (2.48) BS03 rna ? GO:0000027 ... P62399 35165456
    17 7s1g:O (2.48) BS01 rna ? GO:0000027 ... P0AG55 35165456
    18 7s1g:P (2.48) BS01 rna ? GO:0002181 ... P0A7R1 35165456
    19 7s1g:Q (2.48) BS01 rna ? GO:0002181 ... P0A7M9 35165456
    20 7s1g:Q (2.48) BS02 ZN ? GO:0002181 ... P0A7M9 35165456
    21 7s1g:R (2.48) BS01 rna ? GO:0002181 ... P0AA10 35165456
    22 7s1g:S (2.48) BS01 rna ? GO:0002181 ... P0ADY3 35165456
    23 7s1g:S (2.48) BS02 rna ? GO:0002181 ... P0ADY3 35165456
    24 7s1g:T (2.48) BS01 rna ? GO:0002181 ... P02413 35165456
    25 7s1g:U (2.48) BS01 rna ? GO:0000027 ... P0ADY7 35165456
    26 7s1g:V (2.48) BS01 rna ? GO:0000027 ... P0AG44 35165456
    27 7s1g:W (2.48) BS01 rna ? GO:0002181 ... P0C018 35165456
    28 7s1g:W (2.48) BS02 rna ? GO:0002181 ... P0C018 35165456
    29 7s1g:X (2.48) BS01 rna ? GO:0000027 ... P0A7K6 35165456
    30 7s1g:X (2.48) BS02 rna ? GO:0000027 ... P0A7K6 35165456
    31 7s1g:Y (2.48) BS01 rna ? GO:0000027 ... P0A7L3 35165456
    32 7s1g:Z (2.48) BS01 rna ? GO:0002181 ... P0AG48 35165456
    33 7s1g:a (2.48) BS01 rna ? GO:0002181 ... P61175 35165456
    34 7s1g:b (2.48) BS01 rna ? GO:0000027 ... P0ADZ0 35165456
    35 7s1g:c (2.48) BS01 rna ? GO:0000027 ... P60624 35165456
    36 7s1g:d (2.48) BS01 rna ? GO:0000027 ... P68919 35165456
    37 7s1g:e (2.48) BS01 rna ? GO:0000027 ... P0A7L8 35165456
    38 7s1g:e (2.48) BS02 rna ? GO:0000027 ... P0A7L8 35165456
    39 7s1g:f (2.48) BS01 rna ? GO:0000027 ... P0A7M2 35165456
    40 7s1g:g (2.48) BS01 rna ? GO:0000027 ... P0A7M6 35165456
    41 7s1g:h (2.48) BS01 rna ? GO:0000027 ... P0AG51 35165456
    42 7s1g:i (2.48) BS01 rna ? GO:0000027 ... P0A7N4 35165456
    43 7s1g:j (2.48) BS01 rna ? GO:0000027 ... P0A7N9 35165456
    44 7s1g:k (2.48) BS01 rna ? GO:0002181 ... P0A7P5 35165456
    45 7s1g:l (2.48) BS01 rna ? GO:0002181 ... P0A7Q1 35165456
    46 7s1g:m (2.48) BS01 rna ? GO:0002181 ... P0A7Q6 35165456
    47 7s1g:m (2.48) BS02 ZN ? GO:0002181 ... P0A7Q6 35165456
    48 7s1g:n (2.48) BS01 rna ? GO:0000028 ... P02359 35165456
    49 7s1g:o (2.48) BS01 rna ? GO:0000028 ... P0A7W7 35165456
    50 7s1g:p (2.48) BS01 rna ? GO:0000049 ... P0A7X3 35165456
    51 7s1g:p (2.48) BS02 rna ? GO:0000049 ... P0A7X3 35165456
    52 7s1g:q (2.48) BS01 rna ? GO:0000049 ... P0A7R5 35165456
    53 7s1g:r (2.48) BS01 rna ? GO:0002181 ... P0A7R9 35165456
    54 7s1g:t (2.48) BS01 rna ? GO:0000049 ... P0A7S3 35165456
    55 7s1g:u (2.48) BS01 rna ? GO:0000049 ... P0A7S9 35165456
    56 7s1g:v (2.48) BS01 rna ? GO:0000028 ... P0AG59 35165456
    57 7s1g:w (2.48) BS01 rna ? GO:0000028 ... P0ADZ4 35165456
    58 7s1g:w (2.48) BS02 rna ? GO:0000028 ... P0ADZ4 35165456
    59 7s1g:x (2.48) BS01 rna ? GO:0000028 ... P0A7T3 35165456
    60 7s1g:y (2.48) BS01 rna ? GO:0000028 ... P0AG63 35165456
    61 7s1g:z (2.48) BS01 rna ? GO:0002181 ... P0A7T7 35165456
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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