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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7oqe:A (5.9) BS01 rna ? GO:0000243 ... P32605 34349264
    2 7oqe:B (5.9) BS01 rna ? GO:0000243 ... Q00916 34349264
    3 7oqe:C (5.9) BS01 rna ? GO:0000243 ... Q05900 34349264
    4 7oqe:C (5.9) BS02 rna ? GO:0000243 ... Q05900 34349264
    5 7oqe:D (5.9) BS01 rna ? GO:0000243 ... P39682 34349264
    6 7oqe:E (5.9) BS01 rna ? GO:0000243 ... Q03776 34349264
    7 7oqe:G (5.9) BS01 rna ? GO:0000243 ... Q03782 34349264
    8 7oqe:H (5.9) BS01 rna ? GO:0000243 ... Q07508 34349264
    9 7oqe:R (5.9) BS01 rna ? GO:0000398 ... Q99181 34349264
    10 7oqe:U (5.9) BS01 rna ? GO:0003676 ... Q07350 34349264
    11 7oqe:W (5.9) BS01 rna ? GO:0000398 ... Q08963 34349264
    12 7oqe:Y (5.9) BS01 rna ? GO:0000398 ... P40567 34349264
    13 7oqe:b (5.9) BS01 rna ? GO:0000243 ... P40018 34349264
    14 7oqe:d (5.9) BS01 rna ? GO:0000243 ... P43321 34349264
    15 7oqe:h (5.9) BS01 rna ? GO:0000243 ... Q02260 34349264
    16 7oqe:i (5.9) BS01 rna ? GO:0000243 ... Q06217 34349264
    17 7oqe:p (5.9) BS01 rna 3.6.4.13 GO:0000243 ... P21372 34349264
    18 7oqe:s (5.9) BS01 rna ? GO:0000243 ... P40018 34349264
    19 7oqe:t (5.9) BS01 rna ? GO:0000243 ... Q02260 34349264
    20 7oqe:u (5.9) BS01 rna ? GO:0000243 ... Q06217 34349264
    21 7oqe:v (5.9) BS01 rna ? GO:0000243 ... P43321 34349264
    22 7oqe:w (5.9) BS01 rna ? GO:0000243 ... Q12330 34349264
    23 7oqe:y (5.9) BS01 rna ? GO:0000243 ... P40204 34349264
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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