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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6xdq:0 (3.7) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6xdq:1 (3.7) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6xdq:2 (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6xdq:3 (3.7) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6xdq:4 (3.7) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6xdq:9 (3.7) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    7 6xdq:AA (3.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6xdq:AA (3.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6xdq:AA (3.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    10 6xdq:AB (3.7) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    11 6xdq:AE (3.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    12 6xdq:AE (3.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6xdq:AE (3.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6xdq:AE (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6xdq:AE (3.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6xdq:AE (3.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    17 6xdq:C (3.7) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    18 6xdq:E (3.7) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    19 6xdq:F (3.7) BS01 rna ? GO:0000028 ... P68679 32820061
    20 6xdq:G (3.7) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    21 6xdq:I (3.7) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    22 6xdq:I (3.7) BS02 rna ? GO:0000028 ... P0A7V3 32820061
    23 6xdq:J (3.7) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    24 6xdq:K (3.7) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    25 6xdq:K (3.7) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    26 6xdq:L (3.7) BS01 rna ? GO:0002181 ... P02358 32820061
    27 6xdq:M (3.7) BS01 rna ? GO:0000028 ... P02359 32820061
    28 6xdq:M (3.7) BS02 rna ? GO:0000028 ... P02359 32820061
    29 6xdq:N (3.7) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    30 6xdq:O (3.7) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    31 6xdq:P (3.7) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    32 6xdq:Q (3.7) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    33 6xdq:R (3.7) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    34 6xdq:S (3.7) BS01 rna ? GO:0000028 ... P0AG59 32820061
    35 6xdq:T (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    36 6xdq:T (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    37 6xdq:U (3.7) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    38 6xdq:V (3.7) BS01 rna ? GO:0000028 ... P0AG63 32820061
    39 6xdq:W (3.7) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    40 6xdq:X (3.7) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    41 6xdq:X (3.7) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    42 6xdq:b (3.7) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    43 6xdq:b (3.7) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    44 6xdq:c (3.7) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    45 6xdq:e (3.7) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    46 6xdq:f (3.7) BS01 rna ? GO:0000027 ... P0AG51 32820061
    47 6xdq:f (3.7) BS02 rna ? GO:0000027 ... P0AG51 32820061
    48 6xdq:g (3.7) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    49 6xdq:h (3.7) BS01 rna ? GO:0000027 ... P60422 32820061
    50 6xdq:i (3.7) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    51 6xdq:j (3.7) BS01 rna ? GO:0000027 ... P60438 32820061
    52 6xdq:k (3.7) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    53 6xdq:l (3.7) BS01 rna ? GO:0001070 ... P60723 32820061
    54 6xdq:m (3.7) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    55 6xdq:n (3.7) BS01 rna ? GO:0000027 ... P62399 32820061
    56 6xdq:n (3.7) BS02 rna ? GO:0000027 ... P62399 32820061
    57 6xdq:o (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    58 6xdq:p (3.7) BS01 rna ? GO:0000027 ... P0AG55 32820061
    59 6xdq:q (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    60 6xdq:r (3.7) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    61 6xdq:s (3.7) BS01 rna ? GO:0002181 ... P0AA10 32820061
    62 6xdq:t (3.7) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    63 6xdq:t (3.7) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    64 6xdq:u (3.7) BS01 rna ? GO:0002181 ... P02413 32820061
    65 6xdq:v (3.7) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    66 6xdq:v (3.7) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    67 6xdq:w (3.7) BS01 rna ? GO:0000027 ... P0AG44 32820061
    68 6xdq:x (3.7) BS01 rna ? GO:0002181 ... P0C018 32820061
    69 6xdq:x (3.7) BS02 rna ? GO:0002181 ... P0C018 32820061
    70 6xdq:y (3.7) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    71 6xdq:z (3.7) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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