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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rbe:A (3.8) BS01 rna ? GO:0000028 ... P32905 31227701
    2 6rbe:B (3.8) BS01 rna ? GO:0000462 ... P33442 31227701
    3 6rbe:C (3.8) BS01 rna ? GO:0000054 ... P25443 31227701
    4 6rbe:D (3.8) BS01 rna ? GO:0000054 ... P05750 31227701
    5 6rbe:E (3.8) BS01 rna ? GO:0002181 ... P0CX35 31227701
    6 6rbe:F (3.8) BS01 rna ? GO:0000028 ... P26783 31227701
    7 6rbe:G (3.8) BS01 rna ? GO:0000462 ... P0CX37 31227701
    8 6rbe:H (3.8) BS01 rna ? GO:0002181 ... P26786 31227701
    9 6rbe:I (3.8) BS01 rna ? GO:0000462 ... P0CX39 31227701
    10 6rbe:J (3.8) BS01 rna ? GO:0000462 ... O13516 31227701
    11 6rbe:K (3.8) BS01 rna ? GO:0000054 ... Q08745 31227701
    12 6rbe:L (3.8) BS01 rna ? GO:0000028 ... P0CX47 31227701
    13 6rbe:M (3.8) BS01 rna ? GO:0000028 ... P48589 31227701
    14 6rbe:N (3.8) BS01 rna ? GO:0000462 ... P05756 31227701
    15 6rbe:P (3.8) BS01 rna ? GO:0000028 ... Q01855 31227701
    16 6rbe:Q (3.8) BS01 rna ? GO:0000462 ... P0CX51 31227701
    17 6rbe:R (3.8) BS01 rna ? GO:0000028 ... P02407 31227701
    18 6rbe:S (3.8) BS01 rna ? GO:0000054 ... P0CX55 31227701
    19 6rbe:T (3.8) BS01 rna ? GO:0000028 ... P07280 31227701
    20 6rbe:U (3.8) BS01 rna ? GO:0000462 ... P38701 31227701
    21 6rbe:V (3.8) BS01 rna ? GO:0000447 ... P0C0V8 31227701
    22 6rbe:W (3.8) BS01 rna ? GO:0002181 ... P0C0W1 31227701
    23 6rbe:X (3.8) BS01 rna ? GO:0000462 ... P0CX29 31227701
    24 6rbe:Y (3.8) BS01 rna ? GO:0000462 ... P0CX31 31227701
    25 6rbe:Z (3.8) BS01 rna ? GO:0002181 ... Q3E792 31227701
    26 6rbe:b (3.8) BS01 rna ? GO:0000028 ... P35997 31227701
    27 6rbe:c (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 31227701
    28 6rbe:d (3.8) BS01 rna ? GO:0002181 ... P41057 31227701
    29 6rbe:e (3.8) BS01 rna ? GO:0002181 ... P0CX33 31227701
    30 6rbe:f (3.8) BS01 rna ? GO:0000028 ... P05759 31227701
    31 6rbe:g (3.8) BS01 rna ? GO:0001965 ... P38011 31227701
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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