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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v68:AB (6.4) BS01 rna ? GO:0003735 ... P80371 19229291
    2 4v68:AC (6.4) BS01 rna ? GO:0003676 ... P80372 19229291
    3 4v68:AD (6.4) BS01 rna ? GO:0003723 ... P80373 19229291
    4 4v68:AE (6.4) BS01 rna ? GO:0003723 ... Q5SHQ5 19229291
    5 4v68:AF (6.4) BS01 rna ? GO:0003735 ... Q5SLP8 19229291
    6 4v68:AG (6.4) BS01 rna ? GO:0000028 ... P17291 19229291
    7 4v68:AG (6.4) BS02 rna ? GO:0000028 ... P17291 19229291
    8 4v68:AH (6.4) BS01 rna N/A GO:0003735 ... N/A 19229291
    9 4v68:AI (6.4) BS01 rna ? GO:0000049 ... P62669 19229291
    10 4v68:AI (6.4) BS02 rna ? GO:0000049 ... P62669 19229291
    11 4v68:AJ (6.4) BS01 rna ? GO:0000049 ... Q5SHN7 19229291
    12 4v68:AK (6.4) BS01 rna ? GO:0003735 ... P80376 19229291
    13 4v68:AL (6.4) BS01 rna ? GO:0000049 ... Q5SHN3 19229291
    14 4v68:AM (6.4) BS01 rna ? GO:0000049 ... P80377 19229291
    15 4v68:AM (6.4) BS02 rna ? GO:0000049 ... P80377 19229291
    16 4v68:AM (6.4) BS03 rna ? GO:0000049 ... P80377 19229291
    17 4v68:AN (6.4) BS01 rna N/A GO:0003735 ... N/A 19229291
    18 4v68:AO (6.4) BS01 rna ? GO:0003735 ... Q5SJ76 19229291
    19 4v68:AO (6.4) BS02 rna ? GO:0003735 ... Q5SJ76 19229291
    20 4v68:AP (6.4) BS01 rna ? GO:0003735 ... Q5SJH3 19229291
    21 4v68:AQ (6.4) BS01 rna N/A GO:0003735 ... N/A 19229291
    22 4v68:AR (6.4) BS01 rna ? GO:0003735 ... Q5SLQ0 19229291
    23 4v68:AS (6.4) BS01 rna ? GO:0003723 ... Q5SHP2 19229291
    24 4v68:AT (6.4) BS01 rna ? GO:0003723 ... P80380 19229291
    25 4v68:AZ (6.4) BS01 rna ? GO:0003746 ... P60339 19229291
    26 4v68:AZ (6.4) BS02 rna ? GO:0003746 ... P60339 19229291
    27 4v68:AZ (6.4) BS03 PHA ? GO:0003746 ... P60339 19229291
    28 4v68:AZ (6.4) BS04 GDP ? GO:0003746 ... P60339 19229291
    29 4v68:AZ (6.4) BS05 MAU ? GO:0003746 ... P60339 19229291
    30 4v68:B0 (6.4) BS01 rna ? GO:0003735 ... P60493 19229291
    31 4v68:B0 (6.4) BS02 rna ? GO:0003735 ... P60493 19229291
    32 4v68:B0 (6.4) BS03 rna ? GO:0003735 ... P60493 19229291
    33 4v68:B1 (6.4) BS01 rna ? GO:0005840 ... P60494 19229291
    34 4v68:B2 (6.4) BS01 rna ? GO:0003735 ... Q5SHP6 19229291
    35 4v68:B3 (6.4) BS01 rna ? GO:0003735 ... Q5SHQ6 19229291
    36 4v68:B3 (6.4) BS02 rna ? GO:0003735 ... Q5SHQ6 19229291
    37 4v68:B4 (6.4) BS01 rna ? GO:0003735 ... Q5SJE1 19229291
    38 4v68:B5 (6.4) BS01 rna ? GO:0003735 ... P80339 19229291
    39 4v68:B6 (6.4) BS01 rna ? GO:0003735 ... P35871 19229291
    40 4v68:B7 (6.4) BS01 rna ? GO:0003735 ... P80340 19229291
    41 4v68:B8 (6.4) BS01 rna ? GO:0003735 ... P80341 19229291
    42 4v68:B9 (6.4) BS01 rna ? GO:0003735 ... Q72I28 19229291
    43 4v68:BC (6.4) BS01 rna ? GO:0003723 ... Q5SLP7 19229291
    44 4v68:BD (6.4) BS01 rna ? GO:0002181 ... P60405 19229291
    45 4v68:BD (6.4) BS02 rna ? GO:0002181 ... P60405 19229291
    46 4v68:BE (6.4) BS01 rna ? GO:0003735 ... Q5SHN8 19229291
    47 4v68:BF (6.4) BS01 rna ? GO:0003735 ... Q5SHN9 19229291
    48 4v68:BG (6.4) BS01 rna ? GO:0000049 ... Q5SHQ0 19229291
    49 4v68:BG (6.4) BS02 rna ? GO:0000049 ... Q5SHQ0 19229291
    50 4v68:BG (6.4) BS03 rna ? GO:0000049 ... Q5SHQ0 19229291
    51 4v68:BH (6.4) BS01 rna N/A GO:0003735 ... N/A 19229291
    52 4v68:BI (6.4) BS01 rna ? GO:0003735 ... Q5SLQ1 19229291
    53 4v68:BL (6.4) BS01 rna ? GO:0003735 ... P36238 19229291
    54 4v68:BN (6.4) BS01 rna ? GO:0003729 ... P60488 19229291
    55 4v68:BO (6.4) BS01 rna ? GO:0003735 ... Q5SHP8 19229291
    56 4v68:BO (6.4) BS02 rna ? GO:0003735 ... Q5SHP8 19229291
    57 4v68:BP (6.4) BS01 rna ? GO:0003735 ... Q5SHQ7 19229291
    58 4v68:BQ (6.4) BS01 rna ? GO:0000049 ... P60489 19229291
    59 4v68:BR (6.4) BS01 rna ? GO:0003735 ... Q9Z9H5 19229291
    60 4v68:BS (6.4) BS01 rna ? GO:0003735 ... Q5SHQ4 19229291
    61 4v68:BS (6.4) BS02 rna ? GO:0003735 ... Q5SHQ4 19229291
    62 4v68:BT (6.4) BS01 rna ? GO:0003735 ... P60490 19229291
    63 4v68:BT (6.4) BS02 rna ? GO:0003735 ... P60490 19229291
    64 4v68:BU (6.4) BS01 rna ? GO:0000027 ... P60491 19229291
    65 4v68:BV (6.4) BS01 rna ? GO:0003723 ... P60492 19229291
    66 4v68:BW (6.4) BS01 rna ? GO:0003735 ... Q5SHP3 19229291
    67 4v68:BX (6.4) BS01 rna ? GO:0000027 ... Q5SHP0 19229291
    68 4v68:BY (6.4) BS01 rna ? GO:0003723 ... Q5SHP9 19229291
    69 4v68:BZ (6.4) BS01 rna ? GO:0003735 ... Q5SHZ1 19229291
    70 4v68:BZ (6.4) BS02 rna ? GO:0003735 ... Q5SHZ1 19229291
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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