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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4tod:A (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    2 4tod:B (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    3 4tod:C (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    4 4tod:D (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    5 4tod:E (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    6 4tod:F (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    7 4tod:G (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    8 4tod:H (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    9 4tod:I (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    10 4tod:J (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    11 4tod:K (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    12 4tod:L (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    13 4tod:M (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    14 4tod:N (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    15 4tod:O (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    16 4tod:P (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    17 4tod:Q (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    18 4tod:R (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    19 4tod:S (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    20 4tod:T (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    21 4tod:U (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    22 4tod:V (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    23 4tod:W (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    24 4tod:X (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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