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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fpy:A (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    2 1fpy:A (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    3 1fpy:A (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    4 1fpy:A (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256 PDBbind: -logKd/Ki=6.00, Ki=1uM
    5 1fpy:B (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    6 1fpy:B (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    7 1fpy:B (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    8 1fpy:B (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256 PDBbind: -logKd/Ki=6.00, Ki=1uM
    9 1fpy:C (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    10 1fpy:C (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11 1fpy:C (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    12 1fpy:C (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13 1fpy:D (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    14 1fpy:D (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    15 1fpy:D (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    16 1fpy:D (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    17 1fpy:E (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    18 1fpy:E (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    19 1fpy:E (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    20 1fpy:E (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    21 1fpy:F (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    22 1fpy:F (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    23 1fpy:F (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    24 1fpy:F (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    25 1fpy:G (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    26 1fpy:G (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    27 1fpy:G (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    28 1fpy:G (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    29 1fpy:H (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    30 1fpy:H (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    31 1fpy:H (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    32 1fpy:H (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    33 1fpy:I (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    34 1fpy:I (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    35 1fpy:I (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    36 1fpy:I (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    37 1fpy:J (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    38 1fpy:J (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    39 1fpy:J (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    40 1fpy:J (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    41 1fpy:K (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    42 1fpy:K (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    43 1fpy:K (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    44 1fpy:K (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    45 1fpy:L (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    46 1fpy:L (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    47 1fpy:L (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    48 1fpy:L (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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