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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ihl:A (7.64) BS01 dna ? GO:0000786 ... P68431 38191828
    2 8ihl:A (7.64) BS02 dna ? GO:0000786 ... P68431 38191828
    3 8ihl:B (7.64) BS01 dna ? GO:0000781 ... P62805 38191828
    4 8ihl:B (7.64) BS02 dna ? GO:0000781 ... P62805 38191828
    5 8ihl:C (7.64) BS01 dna ? GO:0000786 ... P04908 38191828
    6 8ihl:C (7.64) BS02 dna ? GO:0000786 ... P04908 38191828
    7 8ihl:D (7.64) BS01 dna ? GO:0000786 ... P06899 38191828
    8 8ihl:D (7.64) BS02 dna ? GO:0000786 ... P06899 38191828
    9 8ihl:E (7.64) BS01 dna ? GO:0000786 ... P68431 38191828
    10 8ihl:E (7.64) BS02 dna ? GO:0000786 ... P68431 38191828
    11 8ihl:F (7.64) BS01 dna ? GO:0000781 ... P62805 38191828
    12 8ihl:F (7.64) BS02 dna ? GO:0000781 ... P62805 38191828
    13 8ihl:G (7.64) BS01 dna ? GO:0000786 ... P04908 38191828
    14 8ihl:G (7.64) BS02 dna ? GO:0000786 ... P04908 38191828
    15 8ihl:H (7.64) BS01 dna ? GO:0000786 ... P06899 38191828
    16 8ihl:H (7.64) BS02 dna ? GO:0000786 ... P06899 38191828
    17 8ihl:K (7.64) BS01 dna ? GO:0000786 ... P68431 38191828
    18 8ihl:K (7.64) BS02 dna ? GO:0000786 ... P68431 38191828
    19 8ihl:L (7.64) BS01 dna ? GO:0000781 ... P62805 38191828
    20 8ihl:L (7.64) BS02 dna ? GO:0000781 ... P62805 38191828
    21 8ihl:M (7.64) BS01 dna ? GO:0000786 ... P68431 38191828
    22 8ihl:M (7.64) BS02 dna ? GO:0000786 ... P68431 38191828
    23 8ihl:N (7.64) BS01 dna ? GO:0000781 ... P62805 38191828
    24 8ihl:N (7.64) BS02 dna ? GO:0000781 ... P62805 38191828
    25 8ihl:O (7.64) BS01 dna ? GO:0000786 ... P04908 38191828
    26 8ihl:O (7.64) BS02 dna ? GO:0000786 ... P04908 38191828
    27 8ihl:P (7.64) BS01 dna ? GO:0000786 ... P06899 38191828
    28 8ihl:P (7.64) BS02 dna ? GO:0000786 ... P06899 38191828
    29 8ihl:Q (7.64) BS01 dna ? GO:0000786 ... P68431 38191828
    30 8ihl:Q (7.64) BS02 dna ? GO:0000786 ... P68431 38191828
    31 8ihl:R (7.64) BS01 dna ? GO:0000781 ... P62805 38191828
    32 8ihl:R (7.64) BS02 dna ? GO:0000781 ... P62805 38191828
    33 8ihl:S (7.64) BS01 dna ? GO:0000786 ... P04908 38191828
    34 8ihl:S (7.64) BS02 dna ? GO:0000786 ... P04908 38191828
    35 8ihl:T (7.64) BS01 dna ? GO:0000786 ... P06899 38191828
    36 8ihl:T (7.64) BS02 dna ? GO:0000786 ... P06899 38191828
    37 8ihl:U (7.64) BS01 dna ? GO:0000786 ... P68431 38191828
    38 8ihl:U (7.64) BS02 dna ? GO:0000786 ... P68431 38191828
    39 8ihl:V (7.64) BS01 dna ? GO:0000781 ... P62805 38191828
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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