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BioLiP
Download all results in tab-seperated text for 86 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7uqz:4 (2.44) BS01 rna 3.-.-.- GO:0000055 ... Q03862 36864048
    2 7uqz:4 (2.44) BS02 rna 3.-.-.- GO:0000055 ... Q03862 36864048
    3 7uqz:5 (2.44) BS01 rna ? GO:0003674 ... P53188 36864048
    4 7uqz:5 (2.44) BS02 rna ? GO:0003674 ... P53188 36864048
    5 7uqz:8 (2.44) BS01 rna ? GO:0000027 ... P0CX53 36864048
    6 7uqz:9 (2.44) BS01 rna ? GO:0003674 ... P47019 36864048
    7 7uqz:A (2.44) BS01 rna ? GO:0002181 ... P0CX45 36864048
    8 7uqz:B (2.44) BS01 rna ? GO:0000027 ... P14126 36864048
    9 7uqz:C (2.44) BS01 rna ? GO:0002181 ... P10664 36864048
    10 7uqz:C (2.44) BS02 rna ? GO:0002181 ... P10664 36864048
    11 7uqz:D (2.44) BS01 rna ? GO:0000027 ... P26321 36864048
    12 7uqz:D (2.44) BS02 rna ? GO:0000027 ... P26321 36864048
    13 7uqz:E (2.44) BS01 rna ? GO:0000027 ... Q02326 36864048
    14 7uqz:F (2.44) BS01 rna ? GO:0000463 ... P05737 36864048
    15 7uqz:G (2.44) BS01 rna ? GO:0000470 ... P17076 36864048
    16 7uqz:G (2.44) BS02 rna ? GO:0000470 ... P17076 36864048
    17 7uqz:G (2.44) BS03 rna ? GO:0000470 ... P17076 36864048
    18 7uqz:H (2.44) BS01 rna ? GO:0002181 ... P05738 36864048
    19 7uqz:I (2.44) BS01 rna ? GO:0003676 ... Q08004 36864048
    20 7uqz:I (2.44) BS02 ZN ? GO:0003676 ... Q08004 36864048
    21 7uqz:J (2.44) BS01 rna ? GO:0000027 ... P0C0W9 36864048
    22 7uqz:J (2.44) BS02 rna ? GO:0000027 ... P0C0W9 36864048
    23 7uqz:K (2.44) BS01 rna ? GO:0000462 ... P38779 36864048
    24 7uqz:L (2.44) BS01 rna ? GO:0002181 ... Q12690 36864048
    25 7uqz:L (2.44) BS02 rna ? GO:0002181 ... Q12690 36864048
    26 7uqz:M (2.44) BS01 rna ? GO:0000027 ... P36105 36864048
    27 7uqz:N (2.44) BS01 rna ? GO:0002181 ... P05748 36864048
    28 7uqz:N (2.44) BS02 rna ? GO:0002181 ... P05748 36864048
    29 7uqz:O (2.44) BS01 rna ? GO:0000470 ... P26784 36864048
    30 7uqz:P (2.44) BS01 rna ? GO:0000448 ... P05740 36864048
    31 7uqz:P (2.44) BS02 rna ? GO:0000448 ... P05740 36864048
    32 7uqz:Q (2.44) BS01 rna ? GO:0002181 ... P0CX49 36864048
    33 7uqz:R (2.44) BS01 rna ? GO:0002181 ... P0CX82 36864048
    34 7uqz:S (2.44) BS01 rna ? GO:0002181 ... P0CX23 36864048
    35 7uqz:T (2.44) BS01 rna ? GO:0002181 ... Q02753 36864048
    36 7uqz:U (2.44) BS01 rna ? GO:0002181 ... P05749 36864048
    37 7uqz:V (2.44) BS01 rna ? GO:0002181 ... P0CX41 36864048
    38 7uqz:W (2.44) BS01 rna ? GO:0000027 ... P33201 36864048
    39 7uqz:X (2.44) BS01 rna ? GO:0000027 ... P04456 36864048
    40 7uqz:X (2.44) BS02 rna ? GO:0000027 ... P04456 36864048
    41 7uqz:Y (2.44) BS01 rna ? GO:0002181 ... P05743 36864048
    42 7uqz:Y (2.44) BS02 rna ? GO:0002181 ... P05743 36864048
    43 7uqz:Z (2.44) BS01 rna ? GO:0002181 ... P0C2H6 36864048
    44 7uqz:a (2.44) BS01 rna ? GO:0002181 ... P02406 36864048
    45 7uqz:b (2.44) BS01 rna ? GO:0000054 ... Q02892 36864048
    46 7uqz:b (2.44) BS02 rna ? GO:0000054 ... Q02892 36864048
    47 7uqz:b (2.44) BS03 GDP ? GO:0000054 ... Q02892 36864048
    48 7uqz:b (2.44) BS04 MG ? GO:0000054 ... Q02892 36864048
    49 7uqz:c (2.44) BS01 rna ? GO:0002181 ... P14120 36864048
    50 7uqz:d (2.44) BS01 rna ? GO:0002181 ... P0C2H8 36864048
    51 7uqz:e (2.44) BS01 rna ? GO:0002181 ... P38061 36864048
    52 7uqz:f (2.44) BS01 rna ? GO:0000027 ... P05744 36864048
    53 7uqz:g (2.44) BS01 rna ? GO:0002181 ... P87262 36864048
    54 7uqz:g (2.44) BS02 ZN ? GO:0002181 ... P87262 36864048
    55 7uqz:h (2.44) BS01 rna ? GO:0000463 ... P0CX84 36864048
    56 7uqz:h (2.44) BS02 rna ? GO:0000463 ... P0CX84 36864048
    57 7uqz:i (2.44) BS01 rna ? GO:0002181 ... P05745 36864048
    58 7uqz:j (2.44) BS01 rna ? GO:0000448 ... P49166 36864048
    59 7uqz:j (2.44) BS02 rna ? GO:0000448 ... P49166 36864048
    60 7uqz:j (2.44) BS03 ZN ? GO:0000448 ... P49166 36864048
    61 7uqz:k (2.44) BS01 rna ? GO:0002181 ... P49167 36864048
    62 7uqz:l (2.44) BS01 rna ? GO:0002181 ... P04650 36864048
    63 7uqz:l (2.44) BS02 rna ? GO:0002181 ... P04650 36864048
    64 7uqz:m (2.44) BS01 rna ? GO:0000055 ... P53742 36864048
    65 7uqz:m (2.44) BS02 GDP ? GO:0000055 ... P53742 36864048
    66 7uqz:m (2.44) BS03 MG ? GO:0000055 ... P53742 36864048
    67 7uqz:n (2.44) BS01 rna ? GO:0000462 ... P53261 36864048
    68 7uqz:n (2.44) BS02 rna ? GO:0000462 ... P53261 36864048
    69 7uqz:o (2.44) BS01 rna ? GO:0000463 ... P53927 36864048
    70 7uqz:p (2.44) BS01 rna ? GO:0002181 ... P0CX25 36864048
    71 7uqz:p (2.44) BS02 ZN ? GO:0002181 ... P0CX25 36864048
    72 7uqz:q (2.44) BS01 rna ? GO:0000027 ... Q12080 36864048
    73 7uqz:q (2.44) BS02 rna ? GO:0000027 ... Q12080 36864048
    74 7uqz:r (2.44) BS01 rna ? GO:0000460 ... P40078 36864048
    75 7uqz:s (2.44) BS01 rna ? GO:0000055 ... P40010 36864048
    76 7uqz:t (2.44) BS01 rna ? GO:0000463 ... P40693 36864048
    77 7uqz:t (2.44) BS02 rna ? GO:0000463 ... P40693 36864048
    78 7uqz:t (2.44) BS03 rna ? GO:0000463 ... P40693 36864048
    79 7uqz:u (2.44) BS01 rna ? GO:0001671 ... Q07915 36864048
    80 7uqz:u (2.44) BS02 ZN ? GO:0001671 ... Q07915 36864048
    81 7uqz:v (2.44) BS01 rna ? GO:0000027 ... P36160 36864048
    82 7uqz:v (2.44) BS02 rna ? GO:0000027 ... P36160 36864048
    83 7uqz:w (2.44) BS01 rna ? GO:0000055 ... Q08746 36864048
    84 7uqz:x (2.44) BS01 rna ? GO:0000027 ... P25382 36864048
    85 7uqz:y (2.44) BS01 rna ? GO:0000054 ... Q12522 36864048
    86 7uqz:z (2.44) BS01 rna ? GO:0003674 ... P38202 36864048
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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