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BioLiP
Download all results in tab-seperated text for 43 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qp7:B (3.7) BS01 rna ? GO:0002181 ... P62280 35489072
    2 7qp7:C (3.7) BS01 rna ? GO:0002181 ... P62701 35489072
    3 7qp7:D (3.7) BS01 rna ? GO:0002181 ... P46781 35489072
    4 7qp7:E (3.7) BS01 rna ? GO:0002181 ... P62266 35489072
    5 7qp7:F (3.7) BS01 rna ? GO:0003735 ... P62861 35489072
    6 7qp7:G (3.7) BS01 rna ? GO:0001843 ... P62081 35489072
    7 7qp7:H (3.7) BS01 rna ? GO:0000028 ... P42677 35489072
    8 7qp7:I (3.7) BS01 rna ? GO:0002181 ... P62277 35489072
    9 7qp7:J (3.7) BS01 rna ? GO:0002181 ... P62244 35489072
    10 7qp7:L (3.7) BS01 rna ? GO:0002181 ... P15880 35489072
    11 7qp7:L (3.7) BS02 rna ? GO:0002181 ... P15880 35489072
    12 7qp7:M (3.7) BS01 rna ? GO:0002181 ... P08708 35489072
    13 7qp7:N (3.7) BS01 rna ? GO:0000028 ... P08865 35489072
    14 7qp7:O (3.7) BS01 rna ? GO:0002181 ... P61247 35489072
    15 7qp7:P (3.7) BS01 rna ? GO:0000028 ... P62263 35489072
    16 7qp7:Q (3.7) BS01 rna ? GO:0002181 ... P62854 35489072
    17 7qp7:Q (3.7) BS02 rna ? GO:0002181 ... P62854 35489072
    18 7qp7:Q (3.7) BS03 ZN ? GO:0002181 ... P62854 35489072
    19 7qp7:R (3.7) BS01 rna ? GO:0000462 ... P62241 35489072
    20 7qp7:S (3.7) BS01 rna ? GO:0000082 ... P62753 35489072
    21 7qp7:T (3.7) BS01 rna ? GO:0002181 ... P62847 35489072
    22 7qp7:V (3.7) BS01 rna ? GO:0000028 ... P46782 35489072
    23 7qp7:Y (3.7) BS01 rna ? GO:0000462 ... P62249 35489072
    24 7qp7:Z (3.7) BS01 rna 4.2.99.18 GO:0000977 ... P23396 35489072
    25 7qp7:Z (3.7) BS02 rna 4.2.99.18 GO:0000977 ... P23396 35489072
    26 7qp7:a (3.7) BS01 rna ? GO:0002181 ... P46783 35489072
    27 7qp7:b (3.7) BS01 rna ? GO:0000028 ... P62841 35489072
    28 7qp7:c (3.7) BS01 rna ? GO:0001891 ... P63244 35489072
    29 7qp7:d (3.7) BS01 rna ? GO:0000028 ... P39019 35489072
    30 7qp7:e (3.7) BS01 rna ? GO:0002181 ... P62851 35489072
    31 7qp7:f (3.7) BS01 rna ? GO:0002181 ... P62269 35489072
    32 7qp7:h (3.7) BS01 rna ? GO:0002181 ... P60866 35489072
    33 7qp7:i (3.7) BS01 rna ? GO:0002181 ... P62273 35489072
    34 7qp7:k (3.7) BS01 rna ? GO:0002181 ... P62979 35489072
    35 7qp7:k (3.7) BS02 ZN ? GO:0002181 ... P62979 35489072
    36 7qp7:m (3.7) BS01 rna ? GO:0002181 ... P25398 35489072
    37 7qp7:n (3.7) BS01 rna ? GO:0000028 ... P62857 35489072
    38 7qp7:q (3.7) BS01 rna ? GO:0000049 ... P47813 35489072
    39 7qp7:q (3.7) BS02 rna ? GO:0000049 ... P47813 35489072
    40 7qp7:r (3.7) BS01 rna ? GO:0000423 ... P05198 35489072
    41 7qp7:r (3.7) BS02 rna ? GO:0000423 ... P05198 35489072
    42 7qp7:t (3.7) BS01 rna 3.6.5.3 GO:0000049 ... P41091 35489072
    43 7qp7:y (3.7) BS01 rna ? GO:0001732 ... Q99613 35489072
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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