Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 114 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7o81:AA (3.1) BS01 rna ? GO:0000028 ... G1TZ76 34029205
    2 7o81:AB (3.1) BS01 rna ? GO:0000028 ... G1TIB4 34029205
    3 7o81:AC (3.1) BS01 rna ? GO:0003723 ... G1SK22 34029205
    4 7o81:AC (3.1) BS02 ZN ? GO:0003723 ... G1SK22 34029205
    5 7o81:AD (3.1) BS01 rna ? GO:0003735 ... G1T8A2 34029205
    6 7o81:AE (3.1) BS01 rna N/A GO:0003735 ... N/A 34029205
    7 7o81:AE (3.1) BS02 ZN N/A GO:0003735 ... N/A 34029205
    8 7o81:AF (3.1) BS01 rna ? GO:0001891 ... G1SJB4 34029205
    9 7o81:AG (3.1) BS01 rna ? GO:0003735 ... G1U7M4 34029205
    10 7o81:AG (3.1) BS02 ZN ? GO:0003735 ... G1U7M4 34029205
    11 7o81:AU (3.1) BS01 rna N/A GO:0003677 ... N/A 34029205
    12 7o81:AZ (3.1) BS01 rna ? GO:0000028 ... G1TLT8 34029205
    13 7o81:Aa (3.1) BS01 rna ? GO:0003735 ... G1SS70 34029205
    14 7o81:Aa (3.1) BS02 rna ? GO:0003735 ... G1SS70 34029205
    15 7o81:Ab (3.1) BS01 rna N/A GO:0003723 ... N/A 34029205
    16 7o81:Ac (3.1) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 34029205
    17 7o81:Ad (3.1) BS01 rna N/A GO:0003723 ... N/A 34029205
    18 7o81:Ae (3.1) BS01 rna ? GO:0000028 ... G1TFM5 34029205
    19 7o81:Af (3.1) BS01 rna ? GO:0000082 ... G1TM55 34029205
    20 7o81:Ag (3.1) BS01 rna ? GO:0003735 ... G1SVB0 34029205
    21 7o81:Ah (3.1) BS01 rna ? GO:0000462 ... G1TJW1 34029205
    22 7o81:Ah (3.1) BS02 rna ? GO:0000462 ... G1TJW1 34029205
    23 7o81:Ai (3.1) BS01 rna ? GO:0003723 ... B7NZS8 34029205
    24 7o81:Aj (3.1) BS01 rna ? GO:0003723 ... G1TPV3 34029205
    25 7o81:Ak (3.1) BS01 rna ? GO:0003735 ... G1TRM4 34029205
    26 7o81:Al (3.1) BS01 rna ? GO:0003735 ... G1SFR8 34029205
    27 7o81:Am (3.1) BS01 rna ? GO:0003735 ... G1SP51 34029205
    28 7o81:Am (3.1) BS02 rna ? GO:0003735 ... G1SP51 34029205
    29 7o81:An (3.1) BS01 rna ? GO:0000028 ... G1T1F0 34029205
    30 7o81:Ao (3.1) BS01 rna ? GO:0000028 ... G1U0Q2 34029205
    31 7o81:Ao (3.1) BS02 rna ? GO:0000028 ... G1U0Q2 34029205
    32 7o81:Ap (3.1) BS01 rna ? GO:0000462 ... G1SGX4 34029205
    33 7o81:Aq (3.1) BS01 rna ? GO:0003735 ... G1TU13 34029205
    34 7o81:Ar (3.1) BS01 rna ? GO:0003676 ... G1TPG3 34029205
    35 7o81:As (3.1) BS01 rna N/A GO:0003735 ... N/A 34029205
    36 7o81:At (3.1) BS01 rna ? GO:0003723 ... G1SIZ2 34029205
    37 7o81:Av (3.1) BS01 rna ? GO:0003735 ... G1TG89 34029205
    38 7o81:Aw (3.1) BS01 rna ? GO:0003735 ... G1SZ47 34029205
    39 7o81:Aw (3.1) BS02 rna ? GO:0003735 ... G1SZ47 34029205
    40 7o81:Ax (3.1) BS01 rna ? GO:0003735 ... G1T3D8 34029205
    41 7o81:Ay (3.1) BS01 rna ? GO:0003735 ... G1TDB3 34029205
    42 7o81:BA (3.1) BS01 rna N/A GO:0003723 ... N/A 34029205
    43 7o81:BA (3.1) BS02 rna N/A GO:0003723 ... N/A 34029205
    44 7o81:BB (3.1) BS01 rna ? GO:0003723 ... G1TL06 34029205
    45 7o81:BC (3.1) BS01 rna ? GO:0003723 ... G1SVW5 34029205
    46 7o81:BC (3.1) BS02 rna ? GO:0003723 ... G1SVW5 34029205
    47 7o81:BD (3.1) BS01 rna ? GO:0000027 ... P19949 34029205
    48 7o81:BD (3.1) BS02 rna ? GO:0000027 ... P19949 34029205
    49 7o81:BE (3.1) BS01 rna ? GO:0000027 ... G1SKF7 34029205
    50 7o81:BF (3.1) BS01 rna N/A GO:0000463 ... N/A 34029205
    51 7o81:BF (3.1) BS02 rna N/A GO:0000463 ... N/A 34029205
    52 7o81:BG (3.1) BS01 rna N/A GO:0042254 ... N/A 34029205
    53 7o81:BG (3.1) BS02 rna N/A GO:0042254 ... N/A 34029205
    54 7o81:BH (3.1) BS01 rna ? GO:0002181 ... G1SWI6 34029205
    55 7o81:BI (3.1) BS01 rna ? GO:0000027 ... B7NZQ2 34029205
    56 7o81:BI (3.1) BS02 rna ? GO:0000027 ... B7NZQ2 34029205
    57 7o81:BI (3.1) BS03 rna ? GO:0000027 ... B7NZQ2 34029205
    58 7o81:BJ (3.1) BS01 rna ? GO:0003723 ... G1TUB8 34029205
    59 7o81:BJ (3.1) BS02 rna ? GO:0003723 ... G1TUB8 34029205
    60 7o81:BK (3.1) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 34029205
    61 7o81:BL (3.1) BS01 rna N/A GO:0003735 ... N/A 34029205
    62 7o81:BL (3.1) BS02 rna N/A GO:0003735 ... N/A 34029205
    63 7o81:BM (3.1) BS01 rna ? GO:0003723 ... G1SZ12 34029205
    64 7o81:BN (3.1) BS01 rna ? GO:0002181 ... G1T0C1 34029205
    65 7o81:BN (3.1) BS02 rna ? GO:0002181 ... G1T0C1 34029205
    66 7o81:BO (3.1) BS01 rna N/A GO:0003735 ... N/A 34029205
    67 7o81:BP (3.1) BS01 rna ? GO:0002181 ... G1SCJ6 34029205
    68 7o81:BP (3.1) BS02 rna ? GO:0002181 ... G1SCJ6 34029205
    69 7o81:BQ (3.1) BS01 rna N/A GO:0003735 ... N/A 34029205
    70 7o81:BR (3.1) BS01 rna ? GO:0003723 ... Q3T0W9 34029205
    71 7o81:BR (3.1) BS02 rna ? GO:0003723 ... Q3T0W9 34029205
    72 7o81:BS (3.1) BS01 rna N/A GO:0003735 ... N/A 34029205
    73 7o81:BS (3.1) BS02 rna N/A GO:0003735 ... N/A 34029205
    74 7o81:BT (3.1) BS01 rna ? GO:0003735 ... G1SHQ2 34029205
    75 7o81:BT (3.1) BS02 rna ? GO:0003735 ... G1SHQ2 34029205
    76 7o81:BU (3.1) BS01 rna N/A GO:0003735 ... N/A 34029205
    77 7o81:BV (3.1) BS01 rna ? GO:0000122 ... G1T6D1 34029205
    78 7o81:BV (3.1) BS02 rna ? GO:0000122 ... G1T6D1 34029205
    79 7o81:BW (3.1) BS01 rna ? GO:0000027 ... G1SE28 34029205
    80 7o81:BW (3.1) BS02 rna ? GO:0000027 ... G1SE28 34029205
    81 7o81:BX (3.1) BS01 rna ? GO:0000027 ... G1SE76 34029205
    82 7o81:BX (3.1) BS02 rna ? GO:0000027 ... G1SE76 34029205
    83 7o81:BY (3.1) BS01 rna ? GO:0002181 ... G1SQH0 34029205
    84 7o81:BY (3.1) BS02 rna ? GO:0002181 ... G1SQH0 34029205
    85 7o81:BZ (3.1) BS01 rna ? GO:0003735 ... G1TXF6 34029205
    86 7o81:Ba (3.1) BS01 rna ? GO:0003735 ... G1SNY0 34029205
    87 7o81:Bb (3.1) BS01 rna ? GO:0002181 ... G1SGR6 34029205
    88 7o81:Bc (3.1) BS01 rna ? GO:0002181 ... G1TDL2 34029205
    89 7o81:Bd (3.1) BS01 rna ? GO:0002181 ... G1SHG0 34029205
    90 7o81:Be (3.1) BS01 rna ? GO:0003735 ... G1TUN8 34029205
    91 7o81:Bf (3.1) BS01 rna ? GO:0000049 ... G1SF08 34029205
    92 7o81:Bg (3.1) BS01 rna ? GO:0003735 ... G1TXG5 34029205
    93 7o81:Bg (3.1) BS02 ZN ? GO:0003735 ... G1TXG5 34029205
    94 7o81:Bh (3.1) BS01 rna ? GO:0000463 ... G1SIT5 34029205
    95 7o81:Bh (3.1) BS02 rna ? GO:0000463 ... G1SIT5 34029205
    96 7o81:Bi (3.1) BS01 rna ? GO:0002181 ... G1TTQ5 34029205
    97 7o81:Bj (3.1) BS01 rna ? GO:0003723 ... U3KPD5 34029205
    98 7o81:Bj (3.1) BS02 rna ? GO:0003723 ... U3KPD5 34029205
    99 7o81:Bj (3.1) BS03 ZN ? GO:0003723 ... U3KPD5 34029205
    100 7o81:Bk (3.1) BS01 rna ? GO:0003735 ... G1U001 34029205
    101 7o81:Bl (3.1) BS01 rna ? GO:0003735 ... G1TTN1 34029205
    102 7o81:Bl (3.1) BS02 rna ? GO:0003735 ... G1TTN1 34029205
    103 7o81:Bm (3.1) BS01 rna N/A GO:0003735 ... N/A 34029205
    104 7o81:Bm (3.1) BS02 ZN N/A GO:0003735 ... N/A 34029205
    105 7o81:Bo (3.1) BS01 rna ? GO:0003735 ... G1T040 34029205
    106 7o81:Bo (3.1) BS02 rna ? GO:0003735 ... G1T040 34029205
    107 7o81:Bo (3.1) BS03 ZN ? GO:0003735 ... G1T040 34029205
    108 7o81:Bp (3.1) BS01 rna ? GO:0003735 ... G1SY53 34029205
    109 7o81:Bp (3.1) BS02 ZN ? GO:0003735 ... G1SY53 34029205
    110 7o81:Br (3.1) BS01 rna N/A GO:0003735 ... N/A 34029205
    111 7o81:Bs (3.1) BS01 rna ? GO:0000027 ... G1SPK4 34029205
    112 7o81:Bt (3.1) BS01 rna ? GO:0003723 ... G1SMR7 34029205
    113 7o81:Bv (3.1) BS01 rna ? GO:0000470 ... G1SKZ8 34029205
    114 7o81:Bv (3.1) BS02 rna ? GO:0000470 ... G1SKZ8 34029205
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417