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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yan:A (3.48) BS01 rna ? GO:0003676 ... G1T2G4 32268096
    2 6yan:B (3.48) BS01 rna N/A GO:0000049 ... N/A 32268096
    3 6yan:C (3.48) BS01 rna ? GO:0003735 ... G1TLT8 32268096
    4 6yan:D (3.48) BS01 rna ? GO:0003735 ... G1TN72 32268096
    5 6yan:E (3.48) BS01 rna N/A GO:0003723 ... N/A 32268096
    6 6yan:E (3.48) BS02 rna N/A GO:0003723 ... N/A 32268096
    7 6yan:F (3.48) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 32268096
    8 6yan:F (3.48) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 32268096
    9 6yan:G (3.48) BS01 rna ? GO:0003723 ... G1TK17 32268096
    10 6yan:H (3.48) BS01 rna ? GO:0000028 ... G1TFM5 32268096
    11 6yan:H (3.48) BS02 rna ? GO:0000028 ... G1TFM5 32268096
    12 6yan:I (3.48) BS01 rna ? GO:0003735 ... A0A5K1UJS7 32268096
    13 6yan:J (3.48) BS01 rna ? GO:0003735 ... G1SVB0 32268096
    14 6yan:K (3.48) BS01 rna ? GO:0000462 ... G1TJW1 32268096
    15 6yan:L (3.48) BS01 rna ? GO:0003723 ... B7NZS8 32268096
    16 6yan:M (3.48) BS01 rna ? N/A G1TPV3 32268096
    17 6yan:N (3.48) BS01 rna ? GO:0003735 ... G1TRM4 32268096
    18 6yan:O (3.48) BS01 rna ? GO:0003735 ... G1SFR8 32268096
    19 6yan:P (3.48) BS01 rna ? GO:0003735 ... G1SP51 32268096
    20 6yan:Q (3.48) BS01 rna ? GO:0000028 ... G1T1F0 32268096
    21 6yan:R (3.48) BS01 rna ? GO:0000028 ... G1U0Q2 32268096
    22 6yan:S (3.48) BS01 rna ? GO:0000462 ... G1SGX4 32268096
    23 6yan:T (3.48) BS01 rna ? GO:0003735 ... G1TU13 32268096
    24 6yan:U (3.48) BS01 rna ? GO:0003676 ... G1TPG3 32268096
    25 6yan:V (3.48) BS01 rna ? GO:0000028 ... G1TN62 32268096
    26 6yan:W (3.48) BS01 rna ? GO:0003723 ... G1SIZ2 32268096
    27 6yan:Y (3.48) BS01 rna ? GO:0003735 ... G1TG89 32268096
    28 6yan:Z (3.48) BS01 rna ? GO:0003735 ... G1SZ47 32268096
    29 6yan:a (3.48) BS01 rna ? GO:0003735 ... G1TS40 32268096
    30 6yan:b (3.48) BS01 rna ? GO:0003735 ... G1TFE8 32268096
    31 6yan:b (3.48) BS02 rna ? GO:0003735 ... G1TFE8 32268096
    32 6yan:c (3.48) BS01 rna ? GO:0000028 ... G1TZ76 32268096
    33 6yan:d (3.48) BS01 rna ? GO:0000028 ... G1TIB4 32268096
    34 6yan:e (3.48) BS01 rna ? GO:0003735 ... G1U7M4 32268096
    35 6yan:f (3.48) BS01 rna ? GO:0003735 ... G1SK22 32268096
    36 6yan:g (3.48) BS01 rna ? GO:0001891 ... G1SJB4 32268096
    37 6yan:h (3.48) BS01 rna ? N/A G1TDB3 32268096
    38 6yan:i (3.48) BS01 rna ? GO:0003735 ... G1T8A2 32268096
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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