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BioLiP
Download all results in tab-seperated text for 116 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6txa:A (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    2 6txa:A (2.853) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    3 6txa:A (2.853) BS03 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    4 6txa:A (2.853) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    5 6txa:A (2.853) BS05 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    6 6txa:A (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    7 6txa:A (2.853) BS07 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    8 6txa:A (2.853) BS08 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    9 6txa:B (2.853) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    10 6txa:B (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    11 6txa:B (2.853) BS03 MG 3.1.5.- N/A Q9Y3Z3 32576829
    12 6txa:B (2.853) BS04 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    13 6txa:B (2.853) BS05 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    14 6txa:B (2.853) BS06 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    15 6txa:B (2.853) BS07 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    16 6txa:C (2.853) BS01 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    17 6txa:C (2.853) BS02 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    18 6txa:C (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    19 6txa:C (2.853) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    20 6txa:C (2.853) BS05 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    21 6txa:C (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    22 6txa:C (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    23 6txa:D (2.853) BS01 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    24 6txa:D (2.853) BS02 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    25 6txa:D (2.853) BS03 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    26 6txa:D (2.853) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    27 6txa:D (2.853) BS05 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    28 6txa:D (2.853) BS06 FE 3.1.5.- N/A Q9Y3Z3 32576829
    29 6txa:D (2.853) BS07 MG 3.1.5.- N/A Q9Y3Z3 32576829
    30 6txa:D (2.853) BS08 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    31 6txa:E (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    32 6txa:E (2.853) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    33 6txa:E (2.853) BS03 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    34 6txa:E (2.853) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    35 6txa:E (2.853) BS05 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    36 6txa:E (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    37 6txa:E (2.853) BS07 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    38 6txa:F (2.853) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    39 6txa:F (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    40 6txa:F (2.853) BS03 MG 3.1.5.- N/A Q9Y3Z3 32576829
    41 6txa:F (2.853) BS04 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    42 6txa:F (2.853) BS05 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    43 6txa:F (2.853) BS06 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    44 6txa:F (2.853) BS07 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    45 6txa:G (2.853) BS01 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    46 6txa:G (2.853) BS02 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    47 6txa:G (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    48 6txa:G (2.853) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    49 6txa:G (2.853) BS05 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    50 6txa:G (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    51 6txa:G (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    52 6txa:H (2.853) BS01 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    53 6txa:H (2.853) BS02 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    54 6txa:H (2.853) BS03 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    55 6txa:H (2.853) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    56 6txa:H (2.853) BS05 MG 3.1.5.- N/A Q9Y3Z3 32576829
    57 6txa:H (2.853) BS06 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    58 6txa:H (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    59 6txa:I (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    60 6txa:I (2.853) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    61 6txa:I (2.853) BS03 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    62 6txa:I (2.853) BS04 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    63 6txa:I (2.853) BS05 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    64 6txa:I (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    65 6txa:I (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    66 6txa:J (2.853) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    67 6txa:J (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    68 6txa:J (2.853) BS03 MG 3.1.5.- N/A Q9Y3Z3 32576829
    69 6txa:J (2.853) BS04 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    70 6txa:J (2.853) BS05 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    71 6txa:J (2.853) BS06 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    72 6txa:J (2.853) BS07 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    73 6txa:K (2.853) BS01 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    74 6txa:K (2.853) BS02 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    75 6txa:K (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    76 6txa:K (2.853) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    77 6txa:K (2.853) BS05 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    78 6txa:K (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    79 6txa:K (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    80 6txa:L (2.853) BS01 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    81 6txa:L (2.853) BS02 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    82 6txa:L (2.853) BS03 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    83 6txa:L (2.853) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    84 6txa:L (2.853) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    85 6txa:L (2.853) BS06 MG 3.1.5.- N/A Q9Y3Z3 32576829
    86 6txa:L (2.853) BS07 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    87 6txa:L (2.853) BS08 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    88 6txa:M (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    89 6txa:M (2.853) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    90 6txa:M (2.853) BS03 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    91 6txa:M (2.853) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    92 6txa:M (2.853) BS05 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    93 6txa:M (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    94 6txa:M (2.853) BS07 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    95 6txa:M (2.853) BS08 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    96 6txa:N (2.853) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    97 6txa:N (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    98 6txa:N (2.853) BS03 MG 3.1.5.- N/A Q9Y3Z3 32576829
    99 6txa:N (2.853) BS04 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    100 6txa:N (2.853) BS05 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    101 6txa:N (2.853) BS06 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    102 6txa:N (2.853) BS07 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    103 6txa:O (2.853) BS01 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    104 6txa:O (2.853) BS02 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    105 6txa:O (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    106 6txa:O (2.853) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    107 6txa:O (2.853) BS05 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    108 6txa:O (2.853) BS06 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    109 6txa:O (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    110 6txa:P (2.853) BS01 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    111 6txa:P (2.853) BS02 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    112 6txa:P (2.853) BS03 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    113 6txa:P (2.853) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    114 6txa:P (2.853) BS05 MG 3.1.5.- N/A Q9Y3Z3 32576829
    115 6txa:P (2.853) BS06 XG4 3.1.5.- N/A Q9Y3Z3 32576829
    116 6txa:P (2.853) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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