Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5z56:1 (5.1) BS01 rna ? GO:0000245 ... O75533 29360106
    2 5z56:1 (5.1) BS02 rna ? GO:0000245 ... O75533 29360106
    3 5z56:2 (5.1) BS01 rna ? GO:0000398 ... Q13435 29360106
    4 5z56:2 (5.1) BS02 rna ? GO:0000398 ... Q13435 29360106
    5 5z56:6 (5.1) BS01 ZN ? GO:0000398 ... Q7RTV0 29360106
    6 5z56:6 (5.1) BS02 ZN ? GO:0000398 ... Q7RTV0 29360106
    7 5z56:6 (5.1) BS03 ZN ? GO:0000398 ... Q7RTV0 29360106
    8 5z56:A (5.1) BS01 rna ? GO:0000244 ... Q6P2Q9 29360106
    9 5z56:A (5.1) BS02 rna ? GO:0000244 ... Q6P2Q9 29360106
    10 5z56:A (5.1) BS03 rna ? GO:0000244 ... Q6P2Q9 29360106
    11 5z56:A (5.1) BS04 rna ? GO:0000244 ... Q6P2Q9 29360106
    12 5z56:A (5.1) BS05 peptide ? GO:0000244 ... Q6P2Q9 29360106
    13 5z56:A (5.1) BS06 IHP ? GO:0000244 ... Q6P2Q9 29360106
    14 5z56:C (5.1) BS01 GTP ? GO:0000398 ... Q15029 29360106
    15 5z56:J (5.1) BS01 rna ? GO:0000245 ... Q9BZJ0 29360106
    16 5z56:L (5.1) BS01 rna ? GO:0000077 ... Q99459 29360106
    17 5z56:L (5.1) BS02 rna ? GO:0000077 ... Q99459 29360106
    18 5z56:L (5.1) BS03 rna ? GO:0000077 ... Q99459 29360106
    19 5z56:M (5.1) BS01 rna 2.3.2.27 GO:0000398 ... O15541 29360106
    20 5z56:M (5.1) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 29360106
    21 5z56:N (5.1) BS01 rna ? GO:0000398 ... P41223 29360106
    22 5z56:N (5.1) BS02 ZN ? GO:0000398 ... P41223 29360106
    23 5z56:N (5.1) BS03 ZN ? GO:0000398 ... P41223 29360106
    24 5z56:N (5.1) BS04 ZN ? GO:0000398 ... P41223 29360106
    25 5z56:O (5.1) BS01 rna ? GO:0000398 ... Q9NW64 29360106
    26 5z56:O (5.1) BS02 rna ? GO:0000398 ... Q9NW64 29360106
    27 5z56:O (5.1) BS03 ZN ? GO:0000398 ... Q9NW64 29360106
    28 5z56:O (5.1) BS04 ZN ? GO:0000398 ... Q9NW64 29360106
    29 5z56:O (5.1) BS05 ZN ? GO:0000398 ... Q9NW64 29360106
    30 5z56:P (5.1) BS01 rna ? GO:0000398 ... Q9P013 29360106
    31 5z56:T (5.1) BS01 rna ? GO:0000398 ... O43660 29360106
    32 5z56:a (5.1) BS01 rna ? GO:0000243 ... P62318 29360106
    33 5z56:b (5.1) BS01 rna ? GO:0000387 ... P14678 29360106
    34 5z56:c (5.1) BS01 rna ? GO:0000243 ... P62314 29360106
    35 5z56:d (5.1) BS01 rna ? GO:0000245 ... P62316 29360106
    36 5z56:e (5.1) BS01 rna ? GO:0000245 ... P62304 29360106
    37 5z56:g (5.1) BS01 rna ? GO:0000245 ... P62308 29360106
    38 5z56:h (5.1) BS01 rna ? GO:0000243 ... P62318 29360106
    39 5z56:i (5.1) BS01 rna ? GO:0000387 ... P14678 29360106
    40 5z56:j (5.1) BS01 rna ? GO:0000243 ... P62314 29360106
    41 5z56:k (5.1) BS01 rna ? GO:0000245 ... P62316 29360106
    42 5z56:l (5.1) BS01 rna ? GO:0000245 ... P62304 29360106
    43 5z56:m (5.1) BS01 rna ? GO:0000387 ... P62306 29360106
    44 5z56:n (5.1) BS01 rna ? GO:0000245 ... P62308 29360106
    45 5z56:p (5.1) BS01 rna ? GO:0000398 ... P08579 29360106
    46 5z56:v (5.1) BS01 rna ? GO:0000245 ... Q15428 29360106
    47 5z56:v (5.1) BS02 ZN ? GO:0000245 ... Q15428 29360106
    48 5z56:w (5.1) BS01 rna ? GO:0000375 ... Q12874 29360106
    49 5z56:w (5.1) BS02 rna ? GO:0000375 ... Q12874 29360106
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417