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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    457801 8zle:A (3.35) BS02 Y01 N/A N/A N/A 39033175
    457802 8zle:A (3.35) BS03 PT5 N/A N/A N/A 39033175
    457803 8zle:A (3.35) BS04 PT5 N/A N/A N/A 39033175
    457804 8zle:B (3.35) BS01 PT5 N/A N/A N/A 39033175
    457805 8zle:B (3.35) BS02 CLR N/A N/A N/A 39033175
    457806 8zle:B (3.35) BS03 Y01 N/A N/A N/A 39033175
    457807 8zli:A (3.4) BS01 A1L13 N/A N/A P37840 39172784
    457808 8zli:B (3.4) BS01 A1L13 N/A N/A P37840 39172784
    457809 8zli:C (3.4) BS01 A1L13 N/A N/A P37840 39172784
    457810 8zli:D (3.4) BS01 A1L13 N/A N/A P37840 39172784
    457811 8zli:E (3.4) BS01 A1L13 N/A N/A P37840 39172784
    457812 8zli:E (3.4) BS02 A1L13 N/A N/A P37840 39172784
    457813 8zli:E (3.4) BS03 A1L13 N/A N/A P37840 39172784
    457814 8zli:F (3.4) BS01 A1L13 N/A N/A P37840 39172784
    457815 8zli:F (3.4) BS02 A1L13 N/A N/A P37840 39172784
    457816 8zli:F (3.4) BS03 A1L13 N/A N/A P37840 39172784
    457817 8zli:I (3.4) BS01 A1L13 N/A N/A P37840 39172784
    457818 8zli:J (3.4) BS01 A1L13 N/A N/A P37840 39172784
    457819 8zli:J (3.4) BS02 A1L13 N/A N/A P37840 39172784
    457820 8zli:K (3.4) BS01 A1L13 N/A N/A P37840 39172784
    457821 8zli:L (3.4) BS01 A1L13 N/A N/A P37840 39172784
    457822 8zli:L (3.4) BS02 A1L13 N/A N/A P37840 39172784
    457823 8zlo:A (3.1) BS01 1KI N/A N/A P37840 39172784
    457824 8zlo:A (3.1) BS02 1KI N/A N/A P37840 39172784
    457825 8zlo:A (3.1) BS03 1KI N/A N/A P37840 39172784
    457826 8zlo:B (3.1) BS01 1KI N/A N/A P37840 39172784
    457827 8zlo:C (3.1) BS01 1KI N/A N/A P37840 39172784
    457828 8zlo:C (3.1) BS02 1KI N/A N/A P37840 39172784
    457829 8zlo:C (3.1) BS03 1KI N/A N/A P37840 39172784
    457830 8zlo:D (3.1) BS01 1KI N/A N/A P37840 39172784
    457831 8zlo:E (3.1) BS01 1KI N/A N/A P37840 39172784
    457832 8zlo:E (3.1) BS02 1KI N/A N/A P37840 39172784
    457833 8zlo:E (3.1) BS03 1KI N/A N/A P37840 39172784
    457834 8zlo:F (3.1) BS01 1KI N/A N/A P37840 39172784
    457835 8zlo:F (3.1) BS02 1KI N/A N/A P37840 39172784
    457836 8zlo:F (3.1) BS03 1KI N/A N/A P37840 39172784
    457837 8zlo:G (3.1) BS01 1KI N/A N/A P37840 39172784
    457838 8zlo:G (3.1) BS02 1KI N/A N/A P37840 39172784
    457839 8zlo:G (3.1) BS03 1KI N/A N/A P37840 39172784
    457840 8zlo:G (3.1) BS04 1KI N/A N/A P37840 39172784
    457841 8zlo:H (3.1) BS01 1KI N/A N/A P37840 39172784
    457842 8zlo:H (3.1) BS02 1KI N/A N/A P37840 39172784
    457843 8zlo:H (3.1) BS03 1KI N/A N/A P37840 39172784
    457844 8zlo:I (3.1) BS01 1KI N/A N/A P37840 39172784
    457845 8zlo:I (3.1) BS02 1KI N/A N/A P37840 39172784
    457846 8zlo:I (3.1) BS03 1KI N/A N/A P37840 39172784
    457847 8zlo:I (3.1) BS04 1KI N/A N/A P37840 39172784
    457848 8zlo:J (3.1) BS01 1KI N/A N/A P37840 39172784
    457849 8zlo:J (3.1) BS02 1KI N/A N/A P37840 39172784
    457850 8zlo:J (3.1) BS03 1KI N/A N/A P37840 39172784
    457851 8zlo:O (3.1) BS01 1KI N/A N/A P37840 39172784
    457852 8zlo:T (3.1) BS01 1KI N/A N/A P37840 39172784
    457853 8zly:A (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457854 8zly:A (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    457855 8zly:A (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457856 8zly:B (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457857 8zly:B (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    457858 8zly:B (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457859 8zly:C (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457860 8zly:C (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    457861 8zly:C (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457862 8zly:D (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457863 8zly:D (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    457864 8zly:D (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457865 8zly:E (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457866 8zly:E (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    457867 8zly:E (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457868 8zly:F (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457869 8zly:F (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    457870 8zly:F (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457871 8zly:G (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457872 8zly:G (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    457873 8zly:G (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457874 8zly:H (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457875 8zly:H (1.89) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457876 8zm1:A (2.35) BS01 A1L16 N/A GO:0004672 ... Q15119 38844173
    457877 8zm2:A (2.34) BS01 A1L17 N/A GO:0004672 ... Q15119 38844173
    457878 8zm4:A (1.4) BS06 ILE 3.4.24.27 N/A P00800 N/A
    457879 8zm4:A (1.4) BS07 LYS 3.4.24.27 N/A P00800 N/A
    457880 8zm5:A (1.4) BS01 ILE 3.4.24.27 N/A P00800 N/A
    457881 8zm5:A (1.4) BS02 LYS 3.4.24.27 N/A P00800 N/A
    457882 8zm6:A (1.4) BS01 ILE 3.4.24.27 N/A P00800 N/A
    457883 8zm6:A (1.4) BS02 LYS 3.4.24.27 N/A P00800 N/A
    457884 8zmf:A (3.6) BS01 A1L10 N/A N/A P0ABE7
    P28335    		 39137033
    457885 8zmg:A (3.4) BS01 A1L11 N/A N/A P0ABE7
    P28223    		 39137033
    457886 8zmg:B (3.4) BS01 A1L11 N/A N/A P0ABE7
    P28223    		 39137033
    457887 8zmr:A (3.5) BS01 A1LWL N/A GO:0005277 ... P0AEX9
    Q16572    		 38862671
    457888 8zmy:A (2.9) BS01 1KI N/A N/A P37840 39172784
    457889 8zmy:A (2.9) BS02 1KI N/A N/A P37840 39172784
    457890 8zmy:B (2.9) BS01 1KI N/A N/A P37840 39172784
    457891 8zmy:B (2.9) BS02 1KI N/A N/A P37840 39172784
    457892 8zmy:B (2.9) BS03 1KI N/A N/A P37840 39172784
    457893 8zmy:B (2.9) BS04 1KI N/A N/A P37840 39172784
    457894 8zmy:C (2.9) BS01 1KI N/A N/A P37840 39172784
    457895 8zmy:C (2.9) BS02 1KI N/A N/A P37840 39172784
    457896 8zmy:C (2.9) BS03 1KI N/A N/A P37840 39172784
    457897 8zmy:C (2.9) BS04 1KI N/A N/A P37840 39172784
    457898 8zmy:D (2.9) BS01 1KI N/A N/A P37840 39172784
    457899 8zmy:E (2.9) BS01 1KI N/A N/A P37840 39172784
    457900 8zmy:E (2.9) BS02 1KI N/A N/A P37840 39172784
    457901 8zmy:E (2.9) BS03 1KI N/A N/A P37840 39172784
    457902 8zmy:F (2.9) BS01 1KI N/A N/A P37840 39172784
    457903 8zmy:F (2.9) BS02 1KI N/A N/A P37840 39172784
    457904 8zmy:F (2.9) BS03 1KI N/A N/A P37840 39172784
    457905 8zmy:F (2.9) BS04 1KI N/A N/A P37840 39172784
    457906 8zmy:G (2.9) BS01 1KI N/A N/A P37840 39172784
    457907 8zmy:G (2.9) BS02 1KI N/A N/A P37840 39172784
    457908 8zmy:G (2.9) BS03 1KI N/A N/A P37840 39172784
    457909 8zmy:H (2.9) BS01 1KI N/A N/A P37840 39172784
    457910 8zmy:H (2.9) BS02 1KI N/A N/A P37840 39172784
    457911 8zmy:H (2.9) BS03 1KI N/A N/A P37840 39172784
    457912 8zmy:H (2.9) BS04 1KI N/A N/A P37840 39172784
    457913 8zmy:H (2.9) BS05 1KI N/A N/A P37840 39172784
    457914 8zmy:I (2.9) BS01 1KI N/A N/A P37840 39172784
    457915 8zmy:J (2.9) BS01 1KI N/A N/A P37840 39172784
    457916 8zmy:J (2.9) BS02 1KI N/A N/A P37840 39172784
    457917 8zmy:J (2.9) BS03 1KI N/A N/A P37840 39172784
    457918 8zmy:K (2.9) BS01 1KI N/A N/A P37840 39172784
    457919 8zmy:K (2.9) BS02 1KI N/A N/A P37840 39172784
    457920 8zmy:K (2.9) BS03 1KI N/A N/A P37840 39172784
    457921 8zmy:K (2.9) BS04 1KI N/A N/A P37840 39172784
    457922 8zmy:L (2.9) BS01 1KI N/A N/A P37840 39172784
    457923 8zmy:L (2.9) BS02 1KI N/A N/A P37840 39172784
    457924 8zn1:A (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457925 8zn1:B (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457926 8zn1:C (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457927 8zn1:D (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457928 8zn2:A (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457929 8zn2:B (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457930 8zn2:C (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457931 8zn2:D (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457932 8zn2:E (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457933 8zn2:F (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457934 8zn3:A (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457935 8zn3:B (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457936 8zn3:C (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457937 8zn3:D (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457938 8zn3:E (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457939 8zn3:F (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    457940 8zn4:A (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457941 8zn4:B (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457942 8zn4:C (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457943 8zn4:D (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457944 8znb:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    457945 8znc:A (2.41) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    457946 8znc:A (2.41) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    457947 8znd:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    457948 8zne:A (2.64) BS01 NAP N/A GO:0004352 ... O74024 N/A
    457949 8zne:A (2.64) BS02 GLU N/A GO:0004352 ... O74024 N/A
    457950 8zng:A (2.5) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    457951 8zng:A (2.5) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    457952 8zoy:A (2.5) BS01 LNR N/A N/A P23975 39223283
    457953 8zoz:A (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457954 8zoz:B (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457955 8zoz:C (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457956 8zoz:D (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    457957 8zp1:A (2.5) BS01 A1D9Y N/A N/A P23975 39223283
    457958 8zp2:A (2.4) BS01 A1LX4 N/A N/A P23975 39223283
    457959 8zpb:A (2.6) BS01 LNR N/A N/A P23975 39223283
    457960 8zq3:A (2.43) BS01 GDP N/A GO:0000045 ... P51149 38897042
    457961 8zr5:C (3.31) BS01 A1D8M N/A GO:0004930 ... Q8TDV5 N/A
    457962 8zrk:R (2.82) BS01 A1D8Y N/A GO:0004930 ... Q8TDV5 N/A
    457963 8zrz:A (1.26) BS01 GLC N/A N/A P36924 N/A
    457964 8zrz:A (1.26) BS02 GLC N/A N/A P36924 N/A
    457965 8zrz:A (1.26) BS03 GLC N/A N/A P36924 N/A
    457966 8zrz:A (1.26) BS04 GLC N/A N/A P36924 N/A
    457967 8zrz:A (1.26) BS05 BGC N/A N/A P36924 N/A
    457968 8zrz:A (1.26) BS06 GLC N/A N/A P36924 N/A
    457969 8zrz:A (1.26) BS07 GLC N/A N/A P36924 N/A
    457970 8zrz:A (1.26) BS08 GLC N/A N/A P36924 N/A
    457971 8zrz:A (1.26) BS09 GLC N/A N/A P36924 N/A
    457972 8zrz:A (1.26) BS10 GLC N/A N/A P36924 N/A
    457973 8zrz:A (1.26) BS12 BGC N/A N/A P36924 N/A
    457974 8zsp:R (3.14) BS01 7LD N/A GO:0001594 ... P0ABE7
    Q96RJ0    		 39002128
    457975 8zss:R (3.07) BS01 A1D8X N/A GO:0001594 ... P0ABE7
    Q96RJ0    		 39002128
    457976 8zsv:R (2.96) BS01 A1D8X N/A GO:0001594 ... P0ABE7
    Q923Y8    		 39002128
    457977 8ztx:A (1.70033) BS01 A1D83 N/A N/A Q99640 39163619
    457978 8zu2:A (1.79889) BS01 A1D85 N/A N/A Q99640 39163619
    457979 8zud:A (1.5051) BS01 A1D82 N/A N/A Q99640 39163619
    457980 8zuh:A (3.2) BS01 BMA N/A N/A Q3SX24 39171510
    457981 8zuh:A (3.2) BS02 MAN N/A N/A Q3SX24 39171510
    457982 8zuh:B (3.2) BS01 MAN N/A N/A Q3ZCF3 39171510
    457983 8zuh:C (3.2) BS01 BMA N/A N/A Q3SX24 39171510
    457984 8zuh:C (3.2) BS02 MAN N/A N/A Q3SX24 39171510
    457985 8zul:A (1.80026) BS01 A1D84 N/A N/A Q99640 39163619
    457986 8zwv:A (1.5) BS01 V7Z N/A GO:0002009 ... P00918 N/A
    457987 8zyo:A (3.29) BS01 XB7 N/A N/A Q12809 N/A
    457988 8zyo:B (3.29) BS01 XB7 N/A N/A Q12809 N/A
    457989 8zyo:D (3.29) BS01 XB7 N/A N/A Q12809 N/A
    457990 8zyp:A (3.19) BS01 A1L2J N/A N/A Q12809 N/A
    457991 8zyp:C (3.19) BS01 A1L2J N/A N/A Q12809 N/A
    457992 8zyp:D (3.19) BS01 A1L2J N/A N/A Q12809 N/A
    457993 8zyq:A (3.18) BS01 1II N/A N/A Q12809 N/A
    457994 8zyq:B (3.18) BS01 1II N/A N/A Q12809 N/A
    457995 8zyq:C (3.18) BS01 1II N/A N/A Q12809 N/A
    457996 8zyq:D (3.18) BS01 1II N/A N/A Q12809 N/A
    457997 966c:A (1.9) BS06 RS2 3.4.24.7 GO:0004222 ... P03956 10074939 MOAD: Ki=23nM
    PDBbind: -logKd/Ki=7.64, Ki=23nM
    BindingDB: Ki=23nM
    457998 9aat:A (2.2) BS01 PMP 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 1593633
    457999 9aat:B (2.2) BS01 PMP 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 1593633
    458000 9abp:A (1.97) BS01 GLA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    PDBbind: -logKd/Ki=8.00, Kd=0.01uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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